View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20228_high_10 (Length: 436)
Name: NF20228_high_10
Description: NF20228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20228_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 20 - 423
Target Start/End: Complemental strand, 12105065 - 12104662
Alignment:
| Q |
20 |
cgaaactgtttccatcggaatatagaaatcacaatctataatatctgctcttttcaactttgttaaggtttgagcccattgtatggaacaataagtgtta |
119 |
Q |
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| T |
12105065 |
cgaaactgtttccatcggaatatagaaatcacaatccataatatctgctcttttcaactttgttaaggtttgagcccattgtatggaacaataagtgtta |
12104966 |
T |
|
| Q |
120 |
taggttatatcaaatagtagaagatcttcaagatttagacaattatctgtaaggaaaataagatcatcgccttgttgaaagcgaatgtatttcaaatgta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12104965 |
taggttatatcaaatagtagaagatcttcaagatttggacaattatctgtaaggaaaataagatcatcgccttgttgaaagcgaatgtatttcaaatgta |
12104866 |
T |
|
| Q |
220 |
gggttttgagtgagggtaatgttacgagagtaatattaaactccttacccatattgagaaaactgagcttaagaacaactagggtttcacaagtaaggat |
319 |
Q |
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| T |
12104865 |
gggttttgagtgagggtaatgttacgagagtaatattaaactccttacccatattgagaaaactaagcttaagaacaactagggtttcacaagtaaggat |
12104766 |
T |
|
| Q |
320 |
agaataaggaagatgagggatcattctttcccaataatgcatcctgtgttcaacatgcaggatgaaactgtggatgcataattgggaacaacgtgtattt |
419 |
Q |
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| T |
12104765 |
agaataaggaagatgagggatcattctttgccaataatgcatcctgtgttcaacatgcaggatgaaactgtggatgcataattgggaacaacgtgtattt |
12104666 |
T |
|
| Q |
420 |
gcct |
423 |
Q |
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|||| |
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| T |
12104665 |
gcct |
12104662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 272 - 423
Target Start/End: Complemental strand, 12094470 - 12094319
Alignment:
| Q |
272 |
attgagaaaactgagcttaagaacaactagggtttcacaagtaaggatagaataaggaagatgagggatcattctttcccaataatgcatcctgtgttca |
371 |
Q |
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||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
12094470 |
attgagaaaaccgagcttaagaacaacgagggttgcacaagtaaggatagaataaggcagatgagggatcattctttcccaataatgcatcctgtgttca |
12094371 |
T |
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| Q |
372 |
acatgcaggatgaaactgtggatgcataattgggaacaacgtgtatttgcct |
423 |
Q |
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| T |
12094370 |
acatgcaggatgaaactgtggatacataattgggaaaaacgtgtatttgcct |
12094319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 321
Target Start/End: Original strand, 1446370 - 1446488
Alignment:
| Q |
203 |
aatgtatttcaaatgtagggttttgagtgagggtaatgttacgagagtaatattaaact-ccttacccatattgagaaaactgagcttaagaacaactag |
301 |
Q |
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| T |
1446370 |
aatgtctttcaaatgtagggttttgagtgaaggtaatattatggga-taataacaaaatgccggacccatataaagataactgagcttaagaacaacaag |
1446468 |
T |
|
| Q |
302 |
ggtttcacaagtaaggatag |
321 |
Q |
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|||| ||||||||| |||| |
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| T |
1446469 |
ggttgtacaagtaagaatag |
1446488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 1459624 - 1459657
Alignment:
| Q |
57 |
ataatatctgctcttttcaactttgttaaggttt |
90 |
Q |
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| T |
1459624 |
ataatatctgctctattcaactttgttaaggttt |
1459657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 1459773 - 1459818
Alignment:
| Q |
203 |
aatgtatttcaaatgtagggttttgagtgagggtaatgttacgaga |
248 |
Q |
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||||| ||||| ||||||||||||||||||||||||| ||| |||| |
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| T |
1459773 |
aatgtctttcagatgtagggttttgagtgagggtaatcttatgaga |
1459818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 45810966 - 45810998
Alignment:
| Q |
209 |
tttcaaatgtagggttttgagtgagggtaatgt |
241 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
45810966 |
tttcaaatgtagggttttgagtgaaggtaatgt |
45810998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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