View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20228_high_15 (Length: 379)
Name: NF20228_high_15
Description: NF20228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20228_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 41226038 - 41225839
Alignment:
| Q |
1 |
aataatgtcagttctaactttacttttacatcgttttgctgcattatcaggttatactcctgtttttgctttaatttatatgatggtaattaagagaatt |
100 |
Q |
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| T |
41226038 |
aataatgtcagttctaactttacttttacatcgttttgctgcattatcaggttatactcctgtttttgctttaatttatatgatggtaattaagagaatt |
41225939 |
T |
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| Q |
101 |
gcaaatggaaatgattaattgcatttttcttacttgtaatgtaaatggaaatgtgttctgaaatagggttgaatgtaagagaattaaagtaattaagcaa |
200 |
Q |
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| T |
41225938 |
gcaaatggaaatcattaattgcatttttcttacttgtaatgtaaattgaaatgtgttctgaaatagggttgaatgtaagagaattaaagtaattaagcaa |
41225839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 242 - 371
Target Start/End: Complemental strand, 41225797 - 41225668
Alignment:
| Q |
242 |
caatggtggaacactagtggtaaataatggcaatagcaaagtaccctgtgtcagtgcttgtttggattttgttttttatggtgagtgatctttggaagta |
341 |
Q |
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| T |
41225797 |
caatggtggaacactagtggtaaataatggcaatagcagagtaccctgtgtcagtgcttgtttggattttgttttttatggtgagtgatctttggaagta |
41225698 |
T |
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| Q |
342 |
ttggtgtatccttttttgctctagaattat |
371 |
Q |
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| T |
41225697 |
ttggtgtatccttttttgctctagaattat |
41225668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 323 - 371
Target Start/End: Complemental strand, 29628965 - 29628917
Alignment:
| Q |
323 |
tgagtgatctttggaagtattggtgtatccttttttgctctagaattat |
371 |
Q |
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| T |
29628965 |
tgagtgatctttggaagtattgatgtatcctgttttgctttagaattat |
29628917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 1597063 - 1597109
Alignment:
| Q |
66 |
ttgctttaatttatatgatggtaattaagagaattgcaaatggaaat |
112 |
Q |
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| T |
1597063 |
ttgctttaatctatatgatggtaattaagagaattgcaaatggaaat |
1597109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 555042 - 555092
Alignment:
| Q |
63 |
tttttgctttaatttatatgatggtaattaagagaattgcaaatggaaatg |
113 |
Q |
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| T |
555042 |
tttttgctttaatttatatgaagttaattatgagaactgcaaatggaaatg |
555092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 361
Target Start/End: Original strand, 1597220 - 1597270
Alignment:
| Q |
311 |
tgttttttatggtgagtgatctttggaagtattggtgtatccttttttgct |
361 |
Q |
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| T |
1597220 |
tgttttttatgctgattgatctttggaagtatcggtgtatcctgttttgct |
1597270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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