View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20228_high_18 (Length: 303)
Name: NF20228_high_18
Description: NF20228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20228_high_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 51197493 - 51197224
Alignment:
| Q |
16 |
atgaatggcgattgaatatgctaaccggagaggttaaggagaaagatctttgtggtaacaaacttgtttatatggattttcctatgatcaatgaaaactt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51197493 |
atgaatggcgattgaatatgctaaccggagaggttaaggagaaagatctttgtggtaacaaacttgtttatatggattttcctatgatcaatgaaaactt |
51197394 |
T |
|
| Q |
116 |
tgttggtgttaagcatagatatgcatacacacaagtagttgatcctacaagctctaccactcaaggtaattaccagtttattctttatccagagaattgt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
51197393 |
tgttggtgttaagcatagatatgcatacacacaagtagttgatcctacaagctctaccactcaaggtaattaccagtttattctttatccagagcattgt |
51197294 |
T |
|
| Q |
216 |
aacatgtaattagcctttcatactttctatataaatatttataatatggttttgttcttgtgctatttag |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51197293 |
aacatgtaattagcctttcatactttctatataaatatttataatatggttttgttcttgtgctatttag |
51197224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University