View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20228_high_20 (Length: 263)
Name: NF20228_high_20
Description: NF20228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20228_high_20 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 52170791 - 52170546
Alignment:
| Q |
18 |
agaaggatcaacaagggtgtataaaactgatgaattatcactacagtcaacactgtgaaacgtattcggtagagtttcagttgtaagaaggcaatagtaa |
117 |
Q |
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| T |
52170791 |
agaaggatcaacaagggtgtataaaactgatgaattatcactacattcaacactgtgaaacgtattcggtagagtttcagttgtaagaaggcaatagtaa |
52170692 |
T |
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| Q |
118 |
aacaaagtcacgttagcgacatcatcataaagtttaaacaaactgctattgaatgtgatgttgtcgacaggaacacaaacatcatctctcgagtaatctt |
217 |
Q |
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| T |
52170691 |
aacaaagtcacgttagcgacatcatcataaagtttaaacaaagtgctattgaatgtgatgttgtcgacaggaacacaaacatcatctctcgagtaatctt |
52170592 |
T |
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| Q |
218 |
ccctagtaactctgagtttctgtgttgaattgtcccattcaagaat |
263 |
Q |
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| T |
52170591 |
ccctagtaactctgagcttctgtgttgaattgtcccattcaagaat |
52170546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 263
Target Start/End: Original strand, 31610369 - 31610407
Alignment:
| Q |
225 |
aactctgagtttctgtgttgaattgtcccattcaagaat |
263 |
Q |
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| T |
31610369 |
aactctgagtctctgtgttgtattgtcccattcaagaat |
31610407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 31621194 - 31621248
Alignment:
| Q |
209 |
agtaatcttccctagtaactctgagtttctgtgttgaattgtcccattcaagaat |
263 |
Q |
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| T |
31621194 |
agtaatcgtctctagcgactgtgagtttctgtgttgtattgtcccattcaagaat |
31621248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 31636189 - 31636243
Alignment:
| Q |
209 |
agtaatcttccctagtaactctgagtttctgtgttgaattgtcccattcaagaat |
263 |
Q |
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||||||| || |||| ||| ||||||||||||||| |||||||||||||||||| |
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| T |
31636189 |
agtaatcgtctctagcgactgtgagtttctgtgttgtattgtcccattcaagaat |
31636243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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