View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20228_high_23 (Length: 237)

Name: NF20228_high_23
Description: NF20228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20228_high_23
NF20228_high_23
[»] chr4 (5 HSPs)
chr4 (150-237)||(1601137-1601225)
chr4 (146-192)||(21833637-21833683)
chr4 (149-199)||(571009-571059)
chr4 (149-189)||(53761152-53761192)
chr4 (146-192)||(8183618-8183664)
[»] chr1 (2 HSPs)
chr1 (149-192)||(19467779-19467822)
chr1 (158-192)||(7554874-7554908)
[»] chr8 (4 HSPs)
chr8 (46-192)||(18314867-18315013)
chr8 (149-209)||(21235823-21235883)
chr8 (145-193)||(17627314-17627362)
chr8 (150-192)||(17643284-17643326)
[»] chr6 (2 HSPs)
chr6 (146-191)||(6588612-6588657)
chr6 (143-189)||(9411810-9411856)
[»] chr5 (4 HSPs)
chr5 (146-189)||(28532490-28532533)
chr5 (150-192)||(41900804-41900846)
chr5 (142-192)||(32268239-32268289)
chr5 (143-192)||(41886922-41886971)
[»] chr3 (3 HSPs)
chr3 (149-182)||(514011-514044)
chr3 (31-87)||(51113405-51113461)
chr3 (153-192)||(51763736-51763775)


Alignment Details
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 1601225 - 1601137
Alignment:
Q  150 ttgcttctgctctccgtgagagaccaacattgaggtctttatc-ttttcacctatttttcattcgcaagaatatggaattttgattact 237  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1601225 ttgcttctgctctccgtgagagaccaacattgaggtctttatccttttcacctatttttcattcgcaagaatatggaattttgattact 1601137  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 21833637 - 21833683
Alignment:
Q  146 ggcattgcttctgctctccgtgagagaccaacattgaggtctttatc 192  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  21833637 ggcattgcttcagctctccgtgagagaccaacattgagttctttatc 21833683  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 571059 - 571009
Alignment:
Q  149 attgcttctgctctccgtgagagaccaacattgaggtctttatcttttcac 199  Q
    |||||||||||||| |||| ||| |||||||||||||||||||| ||||||    
T  571059 attgcttctgctctacgtgtgaggccaacattgaggtctttatcctttcac 571009  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 53761152 - 53761192
Alignment:
Q  149 attgcttctgctctccgtgagagaccaacattgaggtcttt 189  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  53761152 attgcttctgctctccgtgaaagaccaacattgacgtcttt 53761192  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 8183618 - 8183664
Alignment:
Q  146 ggcattgcttctgctctccgtgagagaccaacattgaggtctttatc 192  Q
    ||||||||||||||  | | |||||||||||||||||||||||||||    
T  8183618 ggcattgcttctgcattacttgagagaccaacattgaggtctttatc 8183664  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 19467779 - 19467822
Alignment:
Q  149 attgcttctgctctccgtgagagaccaacattgaggtctttatc 192  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  19467779 attgcttctgctatccgtgagagaccaacattgaggtctttatc 19467822  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 192
Target Start/End: Complemental strand, 7554908 - 7554874
Alignment:
Q  158 gctctccgtgagagaccaacattgaggtctttatc 192  Q
    ||||||| |||||||||||||||||||||||||||    
T  7554908 gctctccatgagagaccaacattgaggtctttatc 7554874  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 192
Target Start/End: Original strand, 18314867 - 18315013
Alignment:
Q  46 tcattactacatcgacgtccaattgcttttccacttgttcaagaactgtatgtttctcaaagaggttatcttattggagttgtatcctgtaaccagtgtt 145  Q
    ||||||||||||| |||  |||| |||||||||||||||||||||||||| | ||||| |||||   ||| ||||  | |   |||   ||||||  |      
T  18314867 tcattactacatcaacgatcaatcgcttttccacttgttcaagaactgtaagcttctcgaagagacaatcatattttactgtcatcaaataaccaacgcg 18314966  T
Q  146 ggcattgcttctgctctccgtgagagaccaacattgaggtctttatc 192  Q
    || ||||||| ||||||||||||||||||||| ||||||||||||||    
T  18314967 ggtattgcttttgctctccgtgagagaccaactttgaggtctttatc 18315013  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 21235883 - 21235823
Alignment:
Q  149 attgcttctgctctccgtgagagaccaacattgaggtctttatcttttcacctatttttca 209  Q
    |||||||||||||| |||| ||| |||||||||||||||||||| ||||||  ||||||||    
T  21235883 attgcttctgctctacgtgtgaggccaacattgaggtctttatcctttcacaaatttttca 21235823  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 17627314 - 17627362
Alignment:
Q  145 tggcattgcttctgctctccgtgagagaccaacattgaggtctttatct 193  Q
    |||||||||||||||  |||||||||||||| | |||||||||||||||    
T  17627314 tggcattgcttctgccatccgtgagagaccatctttgaggtctttatct 17627362  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 17643284 - 17643326
Alignment:
Q  150 ttgcttctgctctccgtgagagaccaacattgaggtctttatc 192  Q
    ||||||||||||| |||||||| ||||| ||||||||||||||    
T  17643284 ttgcttctgctctacgtgagaggccaacgttgaggtctttatc 17643326  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 6588612 - 6588657
Alignment:
Q  146 ggcattgcttctgctctccgtgagagaccaacattgaggtctttat 191  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||    
T  6588612 ggcattgcttctgctctccgtgagagaccaaaattgacgtctttat 6588657  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 9411856 - 9411810
Alignment:
Q  143 gttggcattgcttctgctctccgtgagagaccaacattgaggtcttt 189  Q
    |||||||||| |||||||||| ||||||||||||| |||||||||||    
T  9411856 gttggcattgtttctgctctctgtgagagaccaaccttgaggtcttt 9411810  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 189
Target Start/End: Complemental strand, 28532533 - 28532490
Alignment:
Q  146 ggcattgcttctgctctccgtgagagaccaacattgaggtcttt 189  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||    
T  28532533 ggcattgcttctgctctccgtgagagaccgacattgatgtcttt 28532490  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 41900804 - 41900846
Alignment:
Q  150 ttgcttctgctctccgtgagagaccaacattgaggtctttatc 192  Q
    ||||||||||||||||  |||||||||||||||||||||||||    
T  41900804 ttgcttctgctctccgccagagaccaacattgaggtctttatc 41900846  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 32268289 - 32268239
Alignment:
Q  142 tgttggcattgcttctgctctccgtgagagaccaacattgaggtctttatc 192  Q
    |||||| ||||||  ||| ||||||||||||||||||||||||||| ||||    
T  32268289 tgttggtattgctaatgccctccgtgagagaccaacattgaggtctgtatc 32268239  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 41886922 - 41886971
Alignment:
Q  143 gttggcattgcttctgctctccgtgagagaccaacattgaggtctttatc 192  Q
    ||||| |||| |||||||||||| || ||||||||||||| |||||||||    
T  41886922 gttggtattgtttctgctctccgggaaagaccaacattgaagtctttatc 41886971  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 514011 - 514044
Alignment:
Q  149 attgcttctgctctccgtgagagaccaacattga 182  Q
    ||||||||||||||||||||||||||||||||||    
T  514011 attgcttctgctctccgtgagagaccaacattga 514044  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 51113405 - 51113461
Alignment:
Q  31 ggttaatctctcgtgtcattactacatcgacgtccaattgcttttccacttgttcaa 87  Q
    ||||||||||||  |||||||||||||| ||  ||||||| ||||||||||||||||    
T  51113405 ggttaatctctctagtcattactacatcaactaccaattgtttttccacttgttcaa 51113461  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 51763736 - 51763775
Alignment:
Q  153 cttctgctctccgtgagagaccaacattgaggtctttatc 192  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  51763736 cttctgctctccgtgaaagaccaacattgacgtctttatc 51763775  T

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