View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20228_high_3 (Length: 533)
Name: NF20228_high_3
Description: NF20228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20228_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 17 - 516
Target Start/End: Original strand, 36171635 - 36172132
Alignment:
| Q |
17 |
tgagacaattttagataacatgccagaaaagaagctgatattgaataaaaactaatagcaaaaacatgctaaattagagagtaagagcaaccttctgaca |
116 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36171635 |
tgagacaactttagataacatgccagaaaagaagctgatattgaataaaaactaatagcaaaaacatgctaaattagagagtaagagcaaccttctgaca |
36171734 |
T |
|
| Q |
117 |
aaatatctgctaagacggaaattgaaagataaaacgaggtacctgtaacaaagtaatcattgtcataatcagacttgatgatgattagaacatcttcgac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36171735 |
aaatatctgctaagacggaaattgaaagataaaacgaggtacctgtaacaaagtaatcattgtcataatcagacttgatgatgattagaacatcttcgac |
36171834 |
T |
|
| Q |
217 |
gcttgaaactgtggagtcattattctgcttctcaatatcgtcgcttaaaacactgcatattaataaattggagtatgattcactcaacaattaataaatg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36171835 |
gcttgaaactgtggagtcattattctgcttctcaatatcgtcgcttaaaacactgcatattaataaattggagtatgattcactcaacaattaataaatg |
36171934 |
T |
|
| Q |
317 |
catatgttgacgattagtgaagaagaatgcatagtaccctgccagttgtttccaacaacatgaaccactagtcttacacatacaccagatcagacatgac |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36171935 |
catatgttgacgattagtgaagaagaatgcatagtaccctgccagttgtttccaacaacatgaaccactag-----atcatacaccagatcagacatgac |
36172029 |
T |
|
| Q |
417 |
accggtagtaattt---aagnnnnnnnngtggttgacacatatggatactagacacgatattgacgcttaaacattggccaatgtcggatgtgtcaagtg |
513 |
Q |
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|||||||||||||| ||| |||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
36172030 |
accggtagtaatttaagaagaaaaaaaagtggttgacacatacggatactagacacgacactgacgcttaaacattggccaatgtcggatgtgtcaagtg |
36172129 |
T |
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