View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20228_high_5 (Length: 457)

Name: NF20228_high_5
Description: NF20228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20228_high_5
NF20228_high_5
[»] chr3 (3 HSPs)
chr3 (17-390)||(47927076-47927448)
chr3 (194-282)||(40698422-40698511)
chr3 (417-453)||(47927013-47927049)
[»] chr4 (3 HSPs)
chr4 (156-327)||(7725162-7725334)
chr4 (194-282)||(37401898-37401986)
chr4 (177-275)||(841736-841835)
[»] chr1 (2 HSPs)
chr1 (185-282)||(1259288-1259386)
chr1 (229-282)||(8292128-8292181)
[»] chr2 (6 HSPs)
chr2 (195-282)||(13452312-13452400)
chr2 (159-305)||(32934171-32934320)
chr2 (195-282)||(18096176-18096264)
chr2 (168-275)||(23284408-23284516)
chr2 (236-327)||(34353536-34353627)
chr2 (194-262)||(37664823-37664892)
[»] chr7 (1 HSPs)
chr7 (168-282)||(12238854-12238969)
[»] chr5 (3 HSPs)
chr5 (194-283)||(4415019-4415109)
chr5 (194-282)||(13798927-13799016)
chr5 (200-280)||(34196642-34196723)
[»] scaffold0244 (1 HSPs)
scaffold0244 (194-282)||(8049-8138)
[»] chr8 (1 HSPs)
chr8 (194-282)||(33509879-33509968)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 390
Target Start/End: Complemental strand, 47927448 - 47927076
Alignment:
Q  17 agcttaatctgcaaacactttggt-------ttcggctatttgaaggggccttcaattggtttggaattttggatagcgatttatcatcgttgaatctga 109  Q
    ||||||||||||||||||||||||       |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  47927448 agcttaatctgcaaacactttggtcagaactttcggctatttggaggggccttcaattggtttggaattttggatagcgatttatcatcgttgaatctaa 47927349  T
Q  110 ctcccgatcagctttaatttggatctggttgttgatgttgatactaagaatgatttgtatccccatgcaaacttactttcctttattaggaagctctctt 209  Q
    |||||  ||||||||     ||||| ||||||||||  | |     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47927348 ctcccagtcagcttt-----ggatcaggttgttgatactaagg---agaatgatttgtatccccatgcaaacttactttcctttattaggaagctctctt 47927257  T
Q  210 ctcttccttggatagtctctttactcataccttgagagaaggtaacaaatgtgttgattggttggctaaatttaatgttactaatgtcaattatttgaaa 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  47927256 ctcttccttggatagtctctttactcataccttgagagaaggtaacaaatgtgttgattggttggctaaatttaatgttactaatgttgattatttgaaa 47927157  T
Q  310 atgtgggtgtctcctcccgcaccgataaaatttattctgtagacatctctggggtgtttagtcaaatgatttcttagtctg 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47927156 atgtgggtgtctcctcccgcaccgataaaatttattctgtagacatctctggggtgtttagtcaaatgatttcttagtctg 47927076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 40698511 - 40698422
Alignment:
Q  194 attaggaagctctcttctcttccttggatagtctc-tttactcataccttgagagaaggtaacaaatgtgttgattggttggctaaattt 282  Q
    |||| |||||| ||||||||||| ||| | ||||| |||| |||||| ||||||||||| ||| |||||| ||| |||||||||||||||    
T  40698511 attatgaagctttcttctcttccatgggtggtctcatttagtcatactttgagagaagggaacgaatgtgctgactggttggctaaattt 40698422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 453
Target Start/End: Complemental strand, 47927049 - 47927013
Alignment:
Q  417 aataaactaaaaaactttgtccgaaaatgtgggaatg 453  Q
    |||||||||||||||||||||||||||||||||||||    
T  47927049 aataaactaaaaaactttgtccgaaaatgtgggaatg 47927013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 156 - 327
Target Start/End: Complemental strand, 7725334 - 7725162
Alignment:
Q  156 agaatgatttgtatccccatgcaaacttactttcctttattaggaagctctcttctcttccttggatagtctc-tttactcataccttgagagaaggtaa 254  Q
    ||||||||||  |||| |||| ||||||||||||| |||||||||||||||||||||| || ||||||||||| |||||||| || ||||||||| | ||    
T  7725334 agaatgattttcatcctcatgaaaacttactttcccttattaggaagctctcttctctcccatggatagtctcttttactcacactttgagagaatgcaa 7725235  T
Q  255 caaatgtgttgattggttggctaaatttaatgttactaatgtcaattatttgaaaatgtgggtgtctcctccc 327  Q
    ||||||||   ||||||||  | |||||  || |||||||||| ||| ||||||  ||||| | |||||||||    
T  7725234 caaatgtgcaaattggttgattcaatttggtgctactaatgtcgattctttgaagttgtggatatctcctccc 7725162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 37401898 - 37401986
Alignment:
Q  194 attaggaagctctcttctcttccttggatagtctctttactcataccttgagagaaggtaacaaatgtgttgattggttggctaaattt 282  Q
    ||||||||||| ||||||||||| ||| | |||| |||| |||||| ||||||||||| ||| |||||| ||| |||||||||||||||    
T  37401898 attaggaagctttcttctcttccatgggtggtctatttagtcatactttgagagaagggaacgaatgtgctgactggttggctaaattt 37401986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 275
Target Start/End: Original strand, 841736 - 841835
Alignment:
Q  177 caaacttactttcctttattaggaagctctcttctcttccttggatagtct-ctttactcataccttgagagaaggtaacaaatgtgttgattggttggc 275  Q
    |||||||||||||  | |||||||||||||||||||||| ||||   |||| ||||| |||||| ||||||||||| ||  |||||| ||| ||||||||    
T  841736 caaacttactttctctcattaggaagctctcttctcttcattggtcggtctcctttaatcatactttgagagaaggcaatgaatgtgctgactggttggc 841835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 282
Target Start/End: Complemental strand, 1259386 - 1259288
Alignment:
Q  185 ctttcctttattaggaagctctcttctcttccttggatagtctc-tttactcataccttgagagaaggtaacaaatgtgttgattggttggctaaattt 282  Q
    ||||| || ||||||||||| ||||||||||| ||| | ||||| |||| |||||| ||||||||||| ||| |||||| ||| |||||||||||||||    
T  1259386 ctttctttcattaggaagctttcttctcttccatgggtggtctcatttagtcatactttgagagaagggaacgaatgtgctgactggttggctaaattt 1259288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 8292181 - 8292128
Alignment:
Q  229 tttactcataccttgagagaaggtaacaaatgtgttgattggttggctaaattt 282  Q
    |||| |||||| ||||||||||| || ||||||| ||| |||||||||||||||    
T  8292181 tttagtcatactttgagagaagggaagaaatgtgctgactggttggctaaattt 8292128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 282
Target Start/End: Original strand, 13452312 - 13452400
Alignment:
Q  195 ttaggaagctctcttctcttccttggatagtctc-tttactcataccttgagagaaggtaacaaatgtgttgattggttggctaaattt 282  Q
    |||| ||||| ||||||||||| ||| | ||||| ||||||||||  || ||||||||||||||||||| ||| |||||||||||||||    
T  13452312 ttagcaagctttcttctcttccgtgggtggtctcatttactcataatttaagagaaggtaacaaatgtgctgactggttggctaaattt 13452400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 159 - 305
Target Start/End: Complemental strand, 32934320 - 32934171
Alignment:
Q  159 atgatttgtatccccatgcaaacttactttccttt--attaggaagctctcttctcttccttggatagtc-tctttactcataccttgagagaaggtaac 255  Q
    |||||||  ||||| ||||||||||||||||| |   |||| ||||||||||| |||||||||||||| | | ||||||| ||||||  ||||||  |||    
T  32934320 atgattttcatccctatgcaaacttactttccctctcattaagaagctctcttatcttccttggatagccttttttactcgtacctttcgagaagacaac 32934221  T
Q  256 aaatgtgttgattggttggctaaatttaatgttactaatgtcaattattt 305  Q
    | || || | |||| |||| |||||||||||||| |||| ||||| ||||    
T  32934220 acatatgctaattgattggttaaatttaatgttattaatatcaatcattt 32934171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 282
Target Start/End: Original strand, 18096176 - 18096264
Alignment:
Q  195 ttaggaagctctcttctcttccttggatagtctc-tttactcataccttgagagaaggtaacaaatgtgttgattggttggctaaattt 282  Q
    |||||||||| ||||||||||| ||| | ||||| |||| |||||| ||||||||||| ||| |||||| ||| || ||||||||||||    
T  18096176 ttaggaagctttcttctcttccatgggtggtctcatttagtcatactttgagagaagggaacgaatgtgctgactgcttggctaaattt 18096264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 275
Target Start/End: Original strand, 23284408 - 23284516
Alignment:
Q  168 atccccatgcaaacttactttcctttattaggaagctctcttctcttccttggatagtct-ctttactcataccttgagagaaggtaacaaatgtgttga 266  Q
    |||| ||||||||||| |||||  | |||||||| ||||||||||||||||||   |||| ||||| |||||| ||||||||||| ||  |||||| |||    
T  23284408 atcctcatgcaaacttgctttctctcattaggaaactctcttctcttccttggtcggtctcctttaatcatactttgagagaaggcaatgaatgtgctga 23284507  T
Q  267 ttggttggc 275  Q
     ||||||||    
T  23284508 ctggttggc 23284516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 34353536 - 34353627
Alignment:
Q  236 ataccttgagagaaggtaacaaatgtgttgattggttggctaaatttaatgttactaatgtc-aattatttgaaaatgtgggtgtctcctccc 327  Q
    |||| |||||||||| || | ||||| ||||||| ||||||||||||||| ||| ||||||| | || ||||||||||||| | |||||||||    
T  34353536 atacattgagagaagata-cgaatgtattgattgattggctaaatttaatattattaatgtcgatttttttgaaaatgtggatttctcctccc 34353627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 37664892 - 37664823
Alignment:
Q  194 attaggaagctctcttctcttccttggatagtctc-tttactcataccttgagagaaggtaacaaatgtg 262  Q
    |||| |||||| ||||||||||| ||| ||||||| |||| |||||| ||||||||| ||||| ||||||    
T  37664892 attaagaagctttcttctcttccatggttagtctcatttagtcatactttgagagaaagtaacgaatgtg 37664823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 282
Target Start/End: Original strand, 12238854 - 12238969
Alignment:
Q  168 atccccatgcaaacttactttcctttattaggaagctctcttctcttccttggatagtct-ctttactcataccttgagagaaggtaacaaatgtgttga 266  Q
    |||| ||||||||||| |||||  | |||| ||||||||||||| ||||||||   |||| ||||| | |||| ||||||||||| ||  |||||| |||    
T  12238854 atcctcatgcaaacttgctttctctcattaagaagctctcttcttttccttggtcggtctcctttaattatactttgagagaaggcaatgaatgtgctga 12238953  T
Q  267 ttggttggctaaattt 282  Q
    ||||||||| ||||||    
T  12238954 ttggttggccaaattt 12238969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 283
Target Start/End: Complemental strand, 4415109 - 4415019
Alignment:
Q  194 attaggaagctctcttctcttccttggatagtctc-tttactcataccttgagagaaggtaacaaatgtgttgattggttggctaaattta 283  Q
    |||||||||||||||||| ||| |||| | ||||| |||| |||||| |||||||||||||| ||||||| ||  |||||| | |||||||    
T  4415109 attaggaagctctcttcttttctttgggtggtctcctttaatcatactttgagagaaggtaataaatgtgctgtctggttgaccaaattta 4415019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 13798927 - 13799016
Alignment:
Q  194 attaggaagctctcttctcttccttggatagtctc-tttactcataccttgagagaaggtaacaaatgtgttgattggttggctaaattt 282  Q
    ||||||||| | ||||||||||| ||  | ||||| |||| |||||| ||||||||||| ||  |||||| ||| |||||||||||||||    
T  13798927 attaggaagttttcttctcttccatgagtggtctcatttagtcatactttgagagaagggaatgaatgtgctgactggttggctaaattt 13799016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 280
Target Start/End: Original strand, 34196642 - 34196723
Alignment:
Q  200 aagctctcttctcttccttggatagtctc-tttactcataccttgagagaaggtaacaaatgtgttgattggttggctaaat 280  Q
    ||||||||| ||||||||||| | || || ||| | ||||||||||| ||||| ||  ||||||| ||||||||||||||||    
T  34196642 aagctctctgctcttccttggctggtttccttttcccataccttgagggaaggcaatgaatgtgtcgattggttggctaaat 34196723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 8138 - 8049
Alignment:
Q  194 attaggaagctctcttctcttccttggatagtctc-tttactcataccttgagagaaggtaacaaatgtgttgattggttggctaaattt 282  Q
    ||||||||||| ||||||||||| ||| | ||||| |||| |||||| ||||||||||| ||| ||||||  || ||| |||||||||||    
T  8138 attaggaagctttcttctcttccatgggtggtctcatttagtcatactttgagagaagggaacgaatgtgccgactggatggctaaattt 8049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 33509879 - 33509968
Alignment:
Q  194 attaggaagctctcttctcttccttggatagtctc-tttactcataccttgagagaaggtaacaaatgtgttgattggttggctaaattt 282  Q
    ||||||||||| ||||||||||| ||| || |||| |||| |||||| || ||| |||| ||||||| || ||| |||||| ||||||||    
T  33509879 attaggaagctttcttctcttccatgggtaatctcatttagtcatactttaagataagggaacaaatatgctgactggttgactaaattt 33509968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University