View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20228_low_12 (Length: 418)
Name: NF20228_low_12
Description: NF20228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20228_low_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 23 - 418
Target Start/End: Complemental strand, 6904680 - 6904295
Alignment:
| Q |
23 |
ataaataactatctcatttgattagcaataatagtttggatacaatcggacatatcaatgaacaaatagaaactaggtagagatgtagccaccatagcaa |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6904680 |
ataaataactatctcatttgattagcaataatagtttggatacaatcgggcatataaatgaacaaacggaaactaggtagagatgtagccaccatagcaa |
6904581 |
T |
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| Q |
123 |
ggccatgaacaccctcatttgtttgtttcctaataaattcaaagtgcaagtttatgaaaaaggacgagaatgaatttctacattctcttataatagctcc |
222 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| |||||| |||||||||||||||||||| |
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| T |
6904580 |
ggccatgaacaccctcatttgtttgttttctaataaactcaaagtg------tatgaaaaaggatgagaatt--------cattctcttataatagctcc |
6904495 |
T |
|
| Q |
223 |
aagttcagattcatctctactattactatgaaaactagtctaactcaaaaaacacattaccaatatgaaaatccttcaaccatctgataaca----aaca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||| |||| |
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| T |
6904494 |
aagttcagattcatctctactattactatgaaaactagtctaactcaaaaatcacattactaatatgcaaatccttcaaccatctgataacaaacaaaca |
6904395 |
T |
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| Q |
319 |
gtaggcctaaatcctctaattcatcaacttttaggatggacagaattcattatgcttttgctaaaacaaaacttccttcatcgtctctaatacacatttc |
418 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | || |||||||||||||||| |
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| T |
6904394 |
gtaggcctaaatcctctcattcatcaacttttaggatggacaaaattcattatgcttttgctaaaacaaaacttccttaaacgcctctaatacacatttc |
6904295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 20 - 415
Target Start/End: Complemental strand, 6593693 - 6593285
Alignment:
| Q |
20 |
acaataaataactatctcatttgatta-gcaataatagtttggatacaatcggacatatcaatgaacaaatagaaactaggtagagatgtagccaccata |
118 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||| ||||||||| | ||||||||||||||||| ||||||||| ||||||| ||||| || |
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| T |
6593693 |
acaataaataactatctcatttcattaagcaataatagtttagatacaatcaggcatatcaatgaacaaatgaaaactaggttgagatgtggccactcta |
6593594 |
T |
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| Q |
119 |
gcaaggccatgaacaccctcatttgtttgtttcctaataaattcaaa-gtgcaagtttatgaaaaaggacgagaatgaatttctacattctcttataata |
217 |
Q |
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|||| |||||||| |||||||||||||| || ||||||||||||| || |||||| ||||||| |||| || ||||||||||||||||||||||| |
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| T |
6593593 |
gcaa-gccatgaa---cctcatttgtttgtatcataataaattcaaacctgaaagtttttgaaaaaagacgggagtgaatttctacattctcttataagt |
6593498 |
T |
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| Q |
218 |
gctccaagttcagattcatctctactattactatgaaaact-----------------agtctaactcaaaaaacacattaccaatatgaaaatccttca |
300 |
Q |
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| T |
6593497 |
gctccaagtttagattcattcttaagactactatggaaactatcaactactctcgtagagtccaacttaaaagtcgcattattaatatgcaaatccttca |
6593398 |
T |
|
| Q |
301 |
accatctgataacaaacagtaggcctaaatcctctaattcatcaacttttaggatggacagaattcattatgcttttgctaaaacaaaacttccttcatc |
400 |
Q |
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||||||||||| | |||||||| |||||| ||||| |||||||||||||||||||| ||||||| | | |||||||||||||||||||| | ||| |
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| T |
6593397 |
accatctgatagcgaacagtagacctaaagcctctccttcatcaacttttaggatgggtgaaattcat--tccgtttgctaaaacaaaacttccatgatc |
6593300 |
T |
|
| Q |
401 |
gtctctaatacacat |
415 |
Q |
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||||||||||||||| |
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| T |
6593299 |
gtctctaatacacat |
6593285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 10980867 - 10981106
Alignment:
| Q |
20 |
acaataaataactatctcatttgattagcaataatagtttggatacaatcggacatatcaatgaacaaatagaaactaggtagagatgtagccaccatag |
119 |
Q |
| |
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||||||||||||||| |||||| |||||||||||||| || |||||||| | ||| ||| | ||||||| |||||||| || ||||| ||| || ||| |
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| T |
10980867 |
acaataaataactatatcatttcattagcaataataggttcaatacaatcaggcatctcagtaaacaaatggaaactagataacgatgtggccgccctag |
10980966 |
T |
|
| Q |
120 |
caaggccatgaacaccctcatttgtttgtttcctaataaattcaaagtgcaagtttatgaaaaaggacgagaatgaatttctacattctcttataatagc |
219 |
Q |
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|||| | |||| || ||| |||||||||| |||||||||| |||| ||| ||||| ||||||| || ||||||||||||||||| ||||| ||||| || |
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| T |
10980967 |
caagactatgagcaaccttatttgtttgtctcctaataaactcaacctgcgagtttgtgaaaaaagatgagaatgaatttctacactctctaataattgc |
10981066 |
T |
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| Q |
220 |
tccaagttcagattcatctctactattactatgaaaacta |
259 |
Q |
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||||| |||||||||||| ||| ||| |||| |||||| |
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| T |
10981067 |
tccaaaatcagattcatctttacgattgttatggaaacta |
10981106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 135 - 252
Target Start/End: Complemental strand, 6540620 - 6540503
Alignment:
| Q |
135 |
cctcatttgtttgtttcctaataaattcaaagtgcaagtttatgaaaaaggacgagaatgaatttctacattctcttataatagctccaagttcagattc |
234 |
Q |
| |
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|||||||| |||| |||||||||| |||| | ||||||| ||||||| | |||||||||||||||||| ||||| |||||||||||||| || ||||| |
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| T |
6540620 |
cctcatttacttgtctcctaataaactcaacctacaagtttttgaaaaatgtcgagaatgaatttctacactctctaataatagctccaagctccgattc |
6540521 |
T |
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| Q |
235 |
atctctactattactatg |
252 |
Q |
| |
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|||||| | ||||||||| |
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| T |
6540520 |
atctctgcgattactatg |
6540503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 252
Target Start/End: Original strand, 38768628 - 38768851
Alignment:
| Q |
29 |
aactatctcatttgattagcaataatagtttggatacaatcggacatatcaatgaacaaatagaaactaggtagagatgtagccaccatagcaaggccat |
128 |
Q |
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||||||||||||| |||| |||||| | ||| ||||| || |||| ||||| |||| || ||||||||||| | |||| |||||| |||| | | || |
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| T |
38768628 |
aactatctcatttcattatcaataagattttcaatacagtcaaacatctcaataaacagatggaaactaggtaaaaatgtggccaccctagctaaactat |
38768727 |
T |
|
| Q |
129 |
gaacaccctcatttgtttgtttcctaataaattcaaagtgcaagtttatgaaaaaggacgagaatgaatttctacattctcttataatagctccaagttc |
228 |
Q |
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|| || ||||||| ||| |||||||||| |||| | ||||| | ||||| ||||||||||| | ||||||||| || |||||||||| || |
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| T |
38768728 |
gagcaatatcatttgcctgtctcctaataaactcaacctcggagtttgtaaaaaaagacgagaatgatcaacgacattctctgatgatagctccaatatc |
38768827 |
T |
|
| Q |
229 |
agattcatctctactattactatg |
252 |
Q |
| |
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|||||||||||||| ||||||||| |
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| T |
38768828 |
agattcatctctacgattactatg |
38768851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 10417991 - 10418040
Alignment:
| Q |
20 |
acaataaataactatctcatttgattagcaataatagtttggatacaatc |
69 |
Q |
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|||| ||| ||| ||||| ||| ||||||||||||||||||||||||||| |
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| T |
10417991 |
acaagaaaaaaccatctcttttcattagcaataatagtttggatacaatc |
10418040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 34698744 - 34698708
Alignment:
| Q |
20 |
acaataaataactatctcatttgattagcaataatag |
56 |
Q |
| |
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||||||||||||||| |||||| |||||||||||||| |
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|
| T |
34698744 |
acaataaataactatatcatttcattagcaataatag |
34698708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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