View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20228_low_13 (Length: 414)
Name: NF20228_low_13
Description: NF20228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20228_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 6452050 - 6452233
Alignment:
| Q |
12 |
aagaatatatgacacatacatgcattaccaaatcattattttgatagagtttgagaagaaatatttaaggcttt-gttccatcaaagaccaaattgttca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6452050 |
aagaatatatgacacatacatgcattaccaaatcattattgtgatagagtttgagaagaaatatttaaggcttttgttccatcaaagaccaaattgttca |
6452149 |
T |
|
| Q |
111 |
ttttgaaatgatattacacctttgtcaaacactaaaaaaccgatttttgactgaaaacttatacttatgaattaagttgatctg |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
6452150 |
ttttgaaatgatattacacctttgtcaaacactaaaaaaccgatttttgaccgaaaacttatacttatgaactaagttgatctg |
6452233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 260 - 403
Target Start/End: Original strand, 6452301 - 6452444
Alignment:
| Q |
260 |
gatcacattgaatcttcactagaatctttatatttttgcatgtaaattaactacctccgcgtgcaactttaaaacactaattcttgaagtctttgccaaa |
359 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6452301 |
gatcacattgaatcttcactcgaatctttatatttttgcatgtaaattgactacctccgcatgcaactttaaaacactaattcttcaagtctttgccaaa |
6452400 |
T |
|
| Q |
360 |
cctaaatggaggcaacaattttctaaaagcttgaaccttgatga |
403 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6452401 |
cctaaatggaggaaacaattttctaaaagcttgaaccttgatga |
6452444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 6451790 - 6451881
Alignment:
| Q |
15 |
aatatatgacacatacatgcattaccaaatcattattttgatagagtttgagaagaaatatttaagg-ctttgttccatcaaagaccaaatt |
105 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| |||||||||||| | ||||||||||||||||| ||| ||||||||| ||||||||| |
|
|
| T |
6451790 |
aatatatgacacatatatgtattaccaaatcattgttttgatagagtataagaagaaatatttaaggatttttttccatcaaggaccaaatt |
6451881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University