View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20228_low_14 (Length: 393)
Name: NF20228_low_14
Description: NF20228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20228_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 53580839 - 53580445
Alignment:
| Q |
1 |
attcctgtataaaatttatttgtagatacatctaatcaaatcacacttacttcacaa-----------------gtggaaaattagttattcgaactcgc |
83 |
Q |
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| T |
53580839 |
attcctgtataaaatttatttatagatacatctaatcaaatcacacttacttcacaaacattaagtgttagcaagtgaaaaattacttattcgaacccgc |
53580740 |
T |
|
| Q |
84 |
accccaacatattaaatgtgcatatactccttttaccattatatgaatatgtaagaacaaattgttatttataaaaactaaattcaattttctagtagtg |
183 |
Q |
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| T |
53580739 |
accccaacatattaaatgtgcatatactctttttaccattatatgaatatgtaagaacaaattgttatttataaaaactaaattcaattttctagtagtg |
53580640 |
T |
|
| Q |
184 |
attacttcatcatatgaaacttgaatgaattaatttatttccctaatgtggaatcttgtaactacatctt-nnnnnnnnttgaattctaaactacaattt |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| ||| | |
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| T |
53580639 |
attacttcatcatatgaaacttgaatgaattaatttatttccctaatgtggaatcttgtaactatatcttaaaaaaaaattgaattctacactaaaatgt |
53580540 |
T |
|
| Q |
283 |
attttcaacaaatgggtgcagatgcatatgagacaccctaaatagaataaaataaaattaaagagtgcaaagagtcggaggatataatgtacaaa |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
53580539 |
attttcaacaaatgggtgcagatgcatatgagacaccctaaatagaataaaataaaattaaagagtgcaaagtgtcggaggatataatgtacaaa |
53580445 |
T |
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