View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20228_low_15 (Length: 385)
Name: NF20228_low_15
Description: NF20228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20228_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 14 - 355
Target Start/End: Original strand, 8899515 - 8899856
Alignment:
| Q |
14 |
atatttatacactcaatagtcttaaaagctcgaacctcaacagtacgagacttcaaacaaattacaaacaactttaatatgcaacctcatatttaaggcg |
113 |
Q |
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| T |
8899515 |
atatttatacactcaatggtcttaaaagctcgaacctcaacactacgagacttcaaataaactacaaacaactttaatgtccaacctcacatttaaggcg |
8899614 |
T |
|
| Q |
114 |
agtctaagttaaattctcacattacaatctttaacccgaaactaataccatataataaatggtggatctcgtcctaaaatctacaatacatttatacacc |
213 |
Q |
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| T |
8899615 |
aatctaagttgaattctcacattgcaatctttaactcgactctgataccatataataaatggtggatctcatcctaaaatctacaatacatttatacacc |
8899714 |
T |
|
| Q |
214 |
tgatgattcaaacacttgagtaatgtattaacttcaaaccaactacaaacaattgcaatagtttgaacttcaattttgcatacgtaatctagacgtacac |
313 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8899715 |
tgatgattcaaacacttgagcaatgtattaacttcaaaccaactacaaacaatttcaacagtttgaacttcaattttgcacacgtaatctagacgtacac |
8899814 |
T |
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| Q |
314 |
actcccatttaaaatagcaacaacaaaagtgtgatcatgcac |
355 |
Q |
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| T |
8899815 |
actcccatttagaatatcaacaacaaaagtgtgatcatgcac |
8899856 |
T |
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