View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20228_low_18 (Length: 348)
Name: NF20228_low_18
Description: NF20228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20228_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 5 - 334
Target Start/End: Original strand, 9453865 - 9454194
Alignment:
| Q |
5 |
ggacatcatcaaaacaaactgcactatagcggggattgctgccactccaagcatccaacgccatgttcctggagcctaaaagaaatcaaattgattgcat |
104 |
Q |
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| T |
9453865 |
ggacaacatcaatacgaactgcactatagcggggattgctgccactccaagcatccaacgccatgttcctggagcctaaaagaaatcaaattgatgacat |
9453964 |
T |
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| Q |
105 |
nnnnnnntatcattcaagtgttatgttatgaacttcaataactacacatctttcaatcaagcatagaacataccttggtaaatgccaaattgatgaggta |
204 |
Q |
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| T |
9453965 |
aaaaaaatatcattcaagtgttatgttatgaacttcaataactacaggtctttcaatccagcatagaacataccttggtaaatgccaaattgatgaggta |
9454064 |
T |
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| Q |
205 |
agagagaaattgacctcctgttataagtaaaccattggtgcaaaccaatgctcctctaatcttagcaggggaagcttctgagatgtatagaggagcagtc |
304 |
Q |
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| T |
9454065 |
agagagaaattgacctcctgttataagtaaaccattggtgcaaaccaatgctcctctaatcttagcaggggaagcttctgagatgtatagaggagcagtc |
9454164 |
T |
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| Q |
305 |
atggatgcaacaccaactcctaagccaact |
334 |
Q |
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| T |
9454165 |
atggatgcaacaccaactcctaagccaact |
9454194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 5 - 333
Target Start/End: Original strand, 9442589 - 9442931
Alignment:
| Q |
5 |
ggacatcatcaaaacaaactgcactatagcggggattgctgccactccaagcatccaacgccatgttcctggagcctaaaagaaatcaaattgattgcat |
104 |
Q |
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| T |
9442589 |
ggacaacattaatacaaactgtatgatagcgggaatcgctgccaccccaagcatccaacgccatgtcccgggagcctaaaacaaatcaaattgatgacat |
9442688 |
T |
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| Q |
105 |
nnnnnnnta----tcattcaagtgttatgttatgaa----cttcaataactacacatctttcaat--caagcatagaacataccttggtaaatgccaaat |
194 |
Q |
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| T |
9442689 |
aaaaacaaaaatctcattcaagtgttatgttatgaatgaacttcaataactacattgcttcaaatttcaatca---aacataccttggtaaatgccaaat |
9442785 |
T |
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| Q |
195 |
tgatgaggtaagagagaaattgacctcctgttataagtaaaccattggtgcaa-------accaatgctcctctaatcttagcaggggaagcttctgaga |
287 |
Q |
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||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9442786 |
tgatgaggtaagagagaaattgaccacctgttatgagtaaaccattggtgcaaacggcaaaccaatgctcctctaatcttagcaggggaagcttctgaga |
9442885 |
T |
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| Q |
288 |
tgtatagaggagcagtcatggatgcaacaccaactcctaagccaac |
333 |
Q |
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| T |
9442886 |
tgtatagaggagcagtcatggatgcagcaccgactcccaaaccaac |
9442931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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