View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20228_low_22 (Length: 288)
Name: NF20228_low_22
Description: NF20228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20228_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 10 - 275
Target Start/End: Complemental strand, 2935247 - 2934985
Alignment:
| Q |
10 |
gcacgtgaccacggtctgggctgcaccatccgagatttttatgtcttcgacaacattactacgaatgttgttacataagttgtatttaactttaactaat |
109 |
Q |
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| T |
2935247 |
gcacgtgaccacggtctgggctgcgccatccgagatttttatgtcttcgacaacattactacgaatgttgttacatcagttgtatttaactttaactaat |
2935148 |
T |
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| Q |
110 |
tgtagtattaaggatcacgatgcgatgatttaaaacattattagttaccaattgatgattagttattattaatgaggaatagtgaatgaaatttacatga |
209 |
Q |
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| T |
2935147 |
tggagtattaaggatcacgatgcgatgatttaaaacattattagttaccaattgatgattagtt---attaatgaggaatactgaatgaaatttacatga |
2935051 |
T |
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| Q |
210 |
atagaatcaccaagcacaactacaaaacttcctgaagaaggcttgtagcttatccattgtccatct |
275 |
Q |
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| T |
2935050 |
atagaatcaccaagcacaactacaaaacttcctgaagaaggcttgtagcttatccattgtccatct |
2934985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 2920262 - 2920168
Alignment:
| Q |
184 |
aggaatagtgaatgaaatttacatgaatagaatcaccaagcacaactacaaaacttcct---gaagaaggcttgtagcttatccattgtccatct |
275 |
Q |
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| T |
2920262 |
aggaatggttaatggaatttacatgaatagagtcaccaatcatagctacaaaactgcctgaagaagaaggcttgtagcttatccattgtccatct |
2920168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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