View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20228_low_24 (Length: 260)
Name: NF20228_low_24
Description: NF20228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20228_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 25 - 249
Target Start/End: Complemental strand, 13518996 - 13518772
Alignment:
| Q |
25 |
aagtgttactgttgcactacaaatagggcttcctagtaattcttcttctgatcttggatcaaggatggtctcatcaaattgcatcgaaatggctgaaaaa |
124 |
Q |
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| T |
13518996 |
aagtgttactgttgcactacaaatagggcttcctagtaattcttcttctgatcttggatcaaggatggtctcatcaaattgcatagaaatggctgaaaaa |
13518897 |
T |
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| Q |
125 |
gaggaagttaatatgatttctgaacaactacctttggataaattgaataacaagggtcagtattggattccaacaccttctcaaattctcattggtccta |
224 |
Q |
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| T |
13518896 |
gaggaagttaatatgatttctgaacaactacctttggataaattgaataacaagggtcagtattggattccaacaccttctcaaattctcattggtccta |
13518797 |
T |
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| Q |
225 |
cacaattctcatgtcctctgtgctc |
249 |
Q |
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| T |
13518796 |
cacaattctcatgtcctgtgtgctc |
13518772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 25 - 249
Target Start/End: Complemental strand, 13608529 - 13608305
Alignment:
| Q |
25 |
aagtgttactgttgcactacaaatagggcttcctagtaattcttcttctgatcttggatcaaggatggtctcatcaaattgcatcgaaatggctgaaaaa |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13608529 |
aagtgttactgttgcactacaaatagggcttcctagtaattcttcttctgatcttggatcaaggatggtctcatcaaattgcatagaaatggctgaaaaa |
13608430 |
T |
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| Q |
125 |
gaggaagttaatatgatttctgaacaactacctttggataaattgaataacaagggtcagtattggattccaacaccttctcaaattctcattggtccta |
224 |
Q |
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| T |
13608429 |
gaggaagttaatatgatttctgaacaactacctttggataaattgaataacaagggtcagtattggattccaacaccttctcaaattctcattggtccta |
13608330 |
T |
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| Q |
225 |
cacaattctcatgtcctctgtgctc |
249 |
Q |
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| T |
13608329 |
cacaattctcatgtcctgtgtgctc |
13608305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 21038468 - 21038399
Alignment:
| Q |
172 |
taacaagggtcagtattggattccaacaccttctcaaattctcattggtcctacacaattctcatgtcct |
241 |
Q |
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||||||||||||||||||||| || || |||||||| ||||| |||||||||||||||||||| |||||| |
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| T |
21038468 |
taacaagggtcagtattggatccctactccttctcagattcttattggtcctacacaattctcttgtcct |
21038399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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