View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20228_low_25 (Length: 252)
Name: NF20228_low_25
Description: NF20228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20228_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 53580902 - 53581139
Alignment:
| Q |
6 |
gccctaaaatcttaaatgagtaaattaaagaagattcgttgatcaaattagaaatttttgtaccttccttagagcctatcttttctctgataagatctgt |
105 |
Q |
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| T |
53580902 |
gccctaaaatcttaaatgagtaaattaaagaagatttgttgatcaaattagaaatttttgtaccttccttagagcctatcttttctctgataagatctgt |
53581001 |
T |
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| Q |
106 |
gaaaacatgtgtaaggagagagtgaggccctgcagtccaaagaggaacccatttggcatgcatttccttagctaggtccgcaccaaaccaataaaatgca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53581002 |
gaaaacatgtgtaaggagagagtgaggccctgcagtccaaagaggaacccatttggcatgcatttccttagctaggtccgcaccaaaccaataaaatgca |
53581101 |
T |
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| Q |
206 |
tcagtaactaaacaagtaatgttcttccctgtctctgc |
243 |
Q |
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| T |
53581102 |
tcagtaactaaacaagtaatgttcttccctgtctctgc |
53581139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 58 - 243
Target Start/End: Original strand, 53567664 - 53567849
Alignment:
| Q |
58 |
aatttttgtaccttccttagagcctatcttttctctgataagatctgtgaaaacatgtgtaaggagagagtgaggccctgcagtccaaagaggaacccat |
157 |
Q |
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||||| |||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
53567664 |
aatttgtgtaccttccttggagccagtcttttctctgataagatctgtgtaaacatgtgtaagaagagagtgaggtcctgcagtccaaagaggaacccat |
53567763 |
T |
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| Q |
158 |
ttggcatgcatttccttagctaggtccgcaccaaaccaataaaatgcatcagtaactaaacaagtaatgttcttccctgtctctgc |
243 |
Q |
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| T |
53567764 |
ttggcatgcatttcctcagctaaatccgcaccaaaccaaaaaaatgcatcagtaaccaaacaagtaatgttcttccctgtctctgc |
53567849 |
T |
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