View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20228_low_26 (Length: 251)
Name: NF20228_low_26
Description: NF20228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20228_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 111 - 228
Target Start/End: Complemental strand, 13519145 - 13519028
Alignment:
| Q |
111 |
attaacaaactaagcctcataaatcatcaacaacaaaatgaaccctcaaacatttttaatactcaaacaatagaagatgaattagaagacaagagaatgg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13519145 |
attaacaaactaagcctcataaatcatcaacaacaaaatgaaccctcaaacatttttaatactcaaacaatagaagatgaattagaagacaagagaatgg |
13519046 |
T |
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| Q |
211 |
aaagacatggatataatc |
228 |
Q |
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||| |||||||||||||| |
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| T |
13519045 |
aaacacatggatataatc |
13519028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 111 - 228
Target Start/End: Complemental strand, 13608678 - 13608561
Alignment:
| Q |
111 |
attaacaaactaagcctcataaatcatcaacaacaaaatgaaccctcaaacatttttaatactcaaacaatagaagatgaattagaagacaagagaatgg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608678 |
attaacaaactaagcctcataaatcatcaacaacaaaatgaaccctcaaacatttttaatactcaaacaatagaagatgaattagaagacaagagaatgg |
13608579 |
T |
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| Q |
211 |
aaagacatggatataatc |
228 |
Q |
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||| |||||||||||||| |
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| T |
13608578 |
aaacacatggatataatc |
13608561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 13519237 - 13519208
Alignment:
| Q |
19 |
ctcaccaaaccaacatgtttgaaattcaac |
48 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
13519237 |
ctcaccaaaccaacatgtttgaaattcaac |
13519208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 13608770 - 13608741
Alignment:
| Q |
19 |
ctcaccaaaccaacatgtttgaaattcaac |
48 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
13608770 |
ctcaccaaaccaacatgtttgaaattcaac |
13608741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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