View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20228_low_27 (Length: 242)
Name: NF20228_low_27
Description: NF20228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20228_low_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 35211576 - 35211789
Alignment:
| Q |
13 |
atgaattcataaatattggttttagttaccttccgactgggattaaaatagtgattannnnnnnnaataaaaataatgatttggttaagcacaaatgtat |
112 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35211576 |
atgaattcacaaatattggttttagttaccttccgactgggattaaaatagtgattattttttataataaaaataatgatttggttaagcacaaatgtat |
35211675 |
T |
|
| Q |
113 |
ttgtcttttttcttggacggggtggttgaaaaattaaataagaaagtcacaattctaaattaaagagttctgagtattgaccataaaatattaatatgat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35211676 |
ttgtcttttttcttggacggggtggttgaaaaattaaataagaaagtcacaattctaaattaaagagttctgagtattgaccataaaatattaatatgat |
35211775 |
T |
|
| Q |
213 |
tctgtacaaaaact |
226 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
35211776 |
tctgtacaaaaact |
35211789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University