View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20228_low_29 (Length: 236)
Name: NF20228_low_29
Description: NF20228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20228_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 31904384 - 31904168
Alignment:
| Q |
1 |
tcgtcatgtttcgtcaactttccaaacaataaaatgaaatactccgttctattccacttttgttctattctgctccattagttttaacttgtccaatcag |
100 |
Q |
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| T |
31904384 |
tcgttatgtttcgtcaactttccaaacaataaaatgaaatattccgttctattccacttttgttctattccgctccattagttttaacttgtccaatcag |
31904285 |
T |
|
| Q |
101 |
agcctaagttctttcaaactattttaaatccaaaacaaacccaccctaaatgtgtttccactataacaaaacataattatatagaaacaaatatgtaaaa |
200 |
Q |
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| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31904284 |
aacctaagttctttcaaactattttaaatccaaatc-aacccaccctaaatgtgtttccactataacaaaacataattatatagaaacaaatatgtaa-- |
31904188 |
T |
|
| Q |
201 |
gaaggtagttacccaattttg |
221 |
Q |
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|||||||||||||||||||| |
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| T |
31904187 |
-aaggtagttacccaattttg |
31904168 |
T |
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