View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20228_low_3 (Length: 607)
Name: NF20228_low_3
Description: NF20228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20228_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 549; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Complemental strand, 54657650 - 54657066
Alignment:
| Q |
1 |
gcaagtagtcggatttaattaataatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaattggtcgtgtcaac |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657650 |
gcaagtagttagatttaattaataatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaattggtcgtgtcaac |
54657551 |
T |
|
| Q |
101 |
attgcatttgatgtggccgggctgtggcttggtccacgtccgttgctgatcttgggggcttgccggatgcttagctcgttgcatgcagctccattcgtgt |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657550 |
attgcatttgatgtggccggcctgtggcttggtccacgtccgttgctgatcttgggggcttgccggatgcttagctcgttgcatgcagctccattcgtgt |
54657451 |
T |
|
| Q |
201 |
agcacatcataagcacaagagacaatgagggtcagtgaagtgtttgtagcctcccaaagcttggtattactactcttccacaaactccaaagaattatgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657450 |
agcacatcataagcacaagagacaatgagggtcagtgaagtgtttgtagcctcccaaagcttggtattactactcttccacaaactccaaagaattatgg |
54657351 |
T |
|
| Q |
301 |
cagcaagagatcggtcttgatcttgctcctgcgataaaaaccaattttatgtgaatgtatctaaacataaatttactttagttcaattcacttttattca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
54657350 |
cagcaagagatcggtcttgatcttgctcctgtgataaaaaccaattttatgtgaatgtatctaaacataaatttactttagttctattcacttttattca |
54657251 |
T |
|
| Q |
401 |
aaatcagttctttttaactcgattctatcaaactaattttaattactgcataaccaaacacaaactaattatagcttcttgatggacgcacatttcctgc |
500 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| | |
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| T |
54657250 |
aaatcagttctttttaactcgattctatcaaactaattttaattactgcataaccaaacacaatctaattacagcttcttgatggacgcacatttcctac |
54657151 |
T |
|
| Q |
501 |
attttcatcgctgaagcaaacttatcagatgtgtataataatttctttcaatcatctgaaatataaaactgtttcttgatctcgt |
585 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657150 |
attttcatcgctgaagcaaacttatcagaagtgtataataatttctttcaatcatctgaaatataaaactgtttcttgatctcgt |
54657066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 2 - 316
Target Start/End: Complemental strand, 43733703 - 43733389
Alignment:
| Q |
2 |
caagtagtcggatttaattaataatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaattggtcgtgtcaaca |
101 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | ||||| ||||| ||||||||| ||||||| |||||||||| |
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|
| T |
43733703 |
caagtagtcggatttacctaataatagagatcacgttgagtctctaaagcataaatcgtaagcagtaataaagttattattgaaattgaccgtgtcaaca |
43733604 |
T |
|
| Q |
102 |
ttgcatttgatgtggccgggctgtggcttggtccacgtccgttgctgatcttgggggcttgccggatgcttagctcgttgcatgcagctccattcgtgta |
201 |
Q |
| |
|
||||||||||| ||| ||||||| ||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||| |||||||||||||||||| | |
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| T |
43733603 |
ttgcatttgatatggtcgggctgcggcttggtccacgtcaattgatgatcttgggggcttgcatgatacttagctcgttacatgcagctccattcgtgga |
43733504 |
T |
|
| Q |
202 |
gcacatcataagcacaagagacaatgagggtcagtgaagtgtttgtagcctcccaaagcttggtattactactcttccacaaactccaaagaattatggc |
301 |
Q |
| |
|
|||||||||||||| ||||||| | | | | ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||| |
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|
| T |
43733503 |
gcacatcataagcatgagagacattaaagatgggtgaagtgtttgtagcctcccaaagcttggtataacgactcttccacaaactccaaagaatcatggc |
43733404 |
T |
|
| Q |
302 |
agcaagagatcggtc |
316 |
Q |
| |
|
||| |||| |||||| |
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|
| T |
43733403 |
agccagaggtcggtc |
43733389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 9e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 24 - 319
Target Start/End: Original strand, 28570569 - 28570860
Alignment:
| Q |
24 |
aatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaattggtcgtgtcaacattgcatttgatgtggccgggct |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| | |||||||||||||||||||||| |||| | |
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|
| T |
28570569 |
aatagagatcatgttgagtctctaaagcataaactgtaagccataatagagttattattgaaattggatgcgtcaacattgcatttgatgtggtcgggtt |
28570668 |
T |
|
| Q |
124 |
gtggcttggtccacgtccgttgctgatcttgggggcttgccggatgcttagctcgttgcatgcagctccattcgtgtagcacatcataagcacaagagac |
223 |
Q |
| |
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| |||||||||||| || ||||||||||| ||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
28570669 |
gcggcttggtccacatcgattgctgatcttaggg-cttgcccg---cttagctcgttgcatgcagctccattcgtgtagcacatcatgagcataagagac |
28570764 |
T |
|
| Q |
224 |
aatgagggtcagtgaagtgtttgtagcctcccaaagcttggtattactactcttccacaaactccaaagaattatggcagcaagagatcggtcttg |
319 |
Q |
| |
|
||||| ||| || |||||||| |||||||||||||||||||||||| ||||||| | | |||||||||||| |||| ||| |||| ||||||||| |
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|
| T |
28570765 |
aatgaaggtgggtcaagtgtttctagcctcccaaagcttggtattacgactcttctagagactccaaagaatcatggtagccagaggtcggtcttg |
28570860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 142 - 304
Target Start/End: Original strand, 29928835 - 29928997
Alignment:
| Q |
142 |
gttgctgatcttgggggcttgccggatgcttagctcgttgcatgcagctccattcgtgtagcacatcataagcacaagagacaatgagggtcagtgaagt |
241 |
Q |
| |
|
|||| |||||||||||||||| | |||| |||||| |||||||||| ||||||| |||| |||||||| |||| ||||||||||| ||| ||||||| |
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|
| T |
29928835 |
gttgttgatcttgggggcttgtcagatgtttagcttgttgcatgcaaatccattcatgtaacacatcatgagcatgagagacaatgaaggtgggtgaagt |
29928934 |
T |
|
| Q |
242 |
gtttgtagcctcccaaagcttggtattactactcttccacaaactccaaagaattatggcagc |
304 |
Q |
| |
|
|| |||| | ||||||||| || |||| || |||||| ||||| |||||||| |||||||| |
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|
| T |
29928935 |
gtcactagctttccaaagcttcgtgttacgacacttccataaacttcaaagaatcatggcagc |
29928997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 29928741 - 29928810
Alignment:
| Q |
21 |
aataatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaattgg |
90 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||| |
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|
| T |
29928741 |
aataacagagatcatgttgagtctctaaagcataaattgtaagccataataaagttattattgaaattgg |
29928810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 433
Target Start/End: Original strand, 8041347 - 8041398
Alignment:
| Q |
382 |
ttcaattcacttttattcaaaatcagttctttttaactcgattctatcaaac |
433 |
Q |
| |
|
||||||||||||||||||||||||| |||| | ||||| |||||||||||| |
|
|
| T |
8041347 |
ttcaattcacttttattcaaaatcaattctctcaaactcaattctatcaaac |
8041398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 42703168 - 42703227
Alignment:
| Q |
151 |
cttgggggcttgccggatgcttagctcgttgcatgcagctccattcgtgtagcacatcat |
210 |
Q |
| |
|
||||||||| |||||||| ||||||| ||||||| | |||||||||| ||||||||||| |
|
|
| T |
42703168 |
cttgggggcacgccggatgtttagctctttgcatgaaactccattcgtatagcacatcat |
42703227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 34763013 - 34763053
Alignment:
| Q |
39 |
gagtctctaaagcataaaccataagccataatagagttatt |
79 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
34763013 |
gagtctctaaagcataaaccatagcccatgatagagttatt |
34763053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 34763834 - 34763794
Alignment:
| Q |
39 |
gagtctctaaagcataaaccataagccataatagagttatt |
79 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| |
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|
| T |
34763834 |
gagtctctaaagcataaaccatagcccatgatagagttatt |
34763794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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