View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20228_low_32 (Length: 228)
Name: NF20228_low_32
Description: NF20228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20228_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 2563545 - 2563745
Alignment:
| Q |
12 |
agcataggttgtgagttcctcgacattatgtgaagcagcatatttcatgacctctaggagtgtagtttttgaggaatttgaggaatcttgaagaaaatat |
111 |
Q |
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| T |
2563545 |
agcataggttgtgagttcctcgacattatgtgaagcagcatacttcatgacctctaggagtgtagtttttgaggaatttgaggaatcttgaagaaaatat |
2563644 |
T |
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| Q |
112 |
cttattttcttttttgatgttagtggaaaatatattaacttatgaagcggaagagagtcgtcacggccagacagaatatgagatacaaacttgttgtatg |
211 |
Q |
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| T |
2563645 |
cttattttcttttttgatgttagtggaaaatatattaacttatgaagcggaagagagtcgtcacggccagacagaatatgagatacaaacttgttgtatg |
2563744 |
T |
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| Q |
212 |
t |
212 |
Q |
| |
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| |
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| T |
2563745 |
t |
2563745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 34800299 - 34800345
Alignment:
| Q |
34 |
acattatgtgaagcagcatatttcatgacctctaggagtgtagtttt |
80 |
Q |
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| T |
34800299 |
acattatgtgacgcagcatattccatgacctctaagagtgtggtttt |
34800345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 23273349 - 23273383
Alignment:
| Q |
46 |
gcagcatatttcatgacctctaggagtgtagtttt |
80 |
Q |
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| T |
23273349 |
gcagcatatctcatgacctctaggagtgtagtttt |
23273383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 23410916 - 23410882
Alignment:
| Q |
46 |
gcagcatatttcatgacctctaggagtgtagtttt |
80 |
Q |
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||||||||| ||||||||||||||||||||||||| |
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| T |
23410916 |
gcagcatatctcatgacctctaggagtgtagtttt |
23410882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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