View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20228_low_34 (Length: 207)

Name: NF20228_low_34
Description: NF20228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20228_low_34
NF20228_low_34
[»] chr3 (2 HSPs)
chr3 (16-156)||(1138409-1138549)
chr3 (40-81)||(28802764-28802805)
[»] chr2 (2 HSPs)
chr2 (40-77)||(3110531-3110568)
chr2 (44-81)||(28044709-28044746)
[»] chr1 (3 HSPs)
chr1 (40-81)||(6025961-6026002)
chr1 (42-77)||(1118941-1118976)
chr1 (40-85)||(26161596-26161641)
[»] chr5 (1 HSPs)
chr5 (46-78)||(28734169-28734201)
[»] chr7 (2 HSPs)
chr7 (43-86)||(32888960-32889003)
chr7 (42-78)||(7245942-7245978)
[»] chr6 (2 HSPs)
chr6 (42-76)||(2730831-2730865)
chr6 (41-78)||(26373115-26373152)
[»] chr4 (2 HSPs)
chr4 (43-81)||(207500-207538)
chr4 (40-77)||(47789196-47789233)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 1138409 - 1138549
Alignment:
Q  16 attatactatgttacaatgctttagctatagccactatttgacaactctttgtactaaatagcataccactcttgcagtggattatttaccttcatacag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1138409 attatactatgttacaatgctttagctatagccactatttgacaactctttgtactaaatagcataccactcttgcagtggattatttaccttcatacag 1138508  T
Q  116 ctacgacagagtggtcgatattgaaccaccgtcgtgatgtc 156  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  1138509 ctacgacagagtggtcgatattgaaccaccgtcatgatgtc 1138549  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 28802764 - 28802805
Alignment:
Q  40 gctatagccactatttgacaactctttgtactaaatagcata 81  Q
    |||||||||||||||||||||| |||| || |||||||||||    
T  28802764 gctatagccactatttgacaacactttatattaaatagcata 28802805  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 3110531 - 3110568
Alignment:
Q  40 gctatagccactatttgacaactctttgtactaaatag 77  Q
    |||||||||||||||||||||| |||||||||||||||    
T  3110531 gctatagccactatttgacaacgctttgtactaaatag 3110568  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 28044709 - 28044746
Alignment:
Q  44 tagccactatttgacaactctttgtactaaatagcata 81  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  28044709 tagccactatttgacaacactttgtactaaatcgcata 28044746  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 6025961 - 6026002
Alignment:
Q  40 gctatagccactatttgacaactctttgtactaaatagcata 81  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  6025961 gctatagccactatttgacaacattttgtactaaatagcata 6026002  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 1118976 - 1118941
Alignment:
Q  42 tatagccactatttgacaactctttgtactaaatag 77  Q
    |||||||||||||||||||| |||||||||||||||    
T  1118976 tatagccactatttgacaacactttgtactaaatag 1118941  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 26161596 - 26161641
Alignment:
Q  40 gctatagccactatttgacaactctttgtactaaatagcataccac 85  Q
    ||||||||  |||||||||||  |||||||||||||||||||||||    
T  26161596 gctatagctgctatttgacaatactttgtactaaatagcataccac 26161641  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 28734169 - 28734201
Alignment:
Q  46 gccactatttgacaactctttgtactaaatagc 78  Q
    |||||||||||||||||||||||||||||||||    
T  28734169 gccactatttgacaactctttgtactaaatagc 28734201  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 32889003 - 32888960
Alignment:
Q  43 atagccactatttgacaactctttgtactaaatagcataccact 86  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||    
T  32889003 atagccactatttgacaatactttgtactaaatagcatatcact 32888960  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 7245942 - 7245978
Alignment:
Q  42 tatagccactatttgacaactctttgtactaaatagc 78  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  7245942 tatagccgctatttgacaacactttgtactaaatagc 7245978  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 2730831 - 2730865
Alignment:
Q  42 tatagccactatttgacaactctttgtactaaata 76  Q
    |||||||||||||||||||| ||||||||||||||    
T  2730831 tatagccactatttgacaacactttgtactaaata 2730865  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 26373152 - 26373115
Alignment:
Q  41 ctatagccactatttgacaactctttgtactaaatagc 78  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  26373152 ctataaccactatttgacaacactttgtactaaatagc 26373115  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 207538 - 207500
Alignment:
Q  43 atagccactatttgacaactctttgtactaaatagcata 81  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  207538 atagccactatttgacaatactttgtactaaatagcata 207500  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 47789233 - 47789196
Alignment:
Q  40 gctatagccactatttgacaactctttgtactaaatag 77  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  47789233 gctatagccactatttgacaacagtttgtactaaatag 47789196  T

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