View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20229_high_1 (Length: 388)
Name: NF20229_high_1
Description: NF20229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20229_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 15 - 372
Target Start/End: Original strand, 51805859 - 51806216
Alignment:
| Q |
15 |
acagacatgggaaaatcgccggtgaaggagttgtatgataagtcgaggactctgagatattttaaagacgagaaatcaggaagtgttcctgacaggtgca |
114 |
Q |
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| T |
51805859 |
acagacatgggaaaatcgccggtgaaggagttgtatgataagtcgaggactctgagatattttaaagacgagaaatcaggaagtgttcctgacaggtgca |
51805958 |
T |
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| Q |
115 |
tcttgttcatgttgagttgttctaagtgagaacagttgattatgctgtttgttgggaacttgaattttgtattaccgaggtttaggacacgtaaatttgg |
214 |
Q |
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| T |
51805959 |
tcttgttcatgttgagtagttctaagtgagaacagttgattatgctgtttgttgggaacttgaattttgtattaccgaggtttaggacacgtaaatttgg |
51806058 |
T |
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| Q |
215 |
aaggtaagagcaaatatttgatgggaagtttccggaaagtgatgaccaacctgaaaaatcaagacttatgatgtctcctttgttgtcacaggtgattccg |
314 |
Q |
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| T |
51806059 |
aaggtaagagcaaatatttgacgggaagtttccggaaagtgatgaccaacctgaaaaatcaagacttatgatgtctcctttgttgtcacaggtgattccg |
51806158 |
T |
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| Q |
315 |
gtgaagtcgcagattggtttatccactttgcttacaccccaatcaaaagggtagtttc |
372 |
Q |
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| T |
51806159 |
gtgaagtcgcagattggtttatccactttgcttacaccccaatcaaaagggtagtttc |
51806216 |
T |
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