View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20229_low_1 (Length: 531)
Name: NF20229_low_1
Description: NF20229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20229_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 13 - 454
Target Start/End: Complemental strand, 7258337 - 7257902
Alignment:
| Q |
13 |
agcagagagatttatcatactaaaagaatgcaaaggttcactcaatatacatattgtgcactgaacattctgttgtgtttaattgtccgcttaacttttc |
112 |
Q |
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| T |
7258337 |
agcagagagatttatcatactaaaagaatgcaaaggttcactcaatatacatattgtgcactgaacattctgttgtgtttaattgtccgcttaacttttc |
7258238 |
T |
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| Q |
113 |
gaacgatacatacctcagctgtttaaaagatttcttttgctgtttgtgtcgagtttatggaaatattcttatcttgctctatggcagctaatcttcttct |
212 |
Q |
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| T |
7258237 |
gaacgatacatacctcagctgtttaaaagatttcttttgctgtttgtgtcgagtttatggaaatattcttatcttgctctatggcagctaatcttcttct |
7258138 |
T |
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| Q |
213 |
tttgttcacagggtattctgtgtcaagttcagtggcgatggaagttatgttatttcaggaagtgatgatactaacctcagactttggaaggccaaagcat |
312 |
Q |
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| T |
7258137 |
tttgttcacagggtattctgtgtcaagttcagtggcgatggaagttatgttatttcaggaagtgatgatactaacctcagactttggaaggccaaagcat |
7258038 |
T |
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| Q |
313 |
cagaacaacttggagtagtaagttgatttcattgttgattcattcatcctctttttttacacacac-----acnnnnnnnnnnnnnnctgtcatctatta |
407 |
Q |
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| T |
7258037 |
cagaacaacttggagtagtaagttgattt-----------cattcatcctctttttttacacacacaaaaaaaaaaaaaaaaaaaaactgtcatctatta |
7257949 |
T |
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| Q |
408 |
attgtggttcatgttgtactaagattgaaattctattataactgtga |
454 |
Q |
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| T |
7257948 |
attgtggttcatgttgtactaagattgaaattctattataactgtga |
7257902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 460 - 522
Target Start/End: Complemental strand, 7257862 - 7257800
Alignment:
| Q |
460 |
ttaataatttctcttctgagaggcccttcaattcattccgagattcacctgtttatgatgatg |
522 |
Q |
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| T |
7257862 |
ttaataatttctcttctgagaggcccttcagttcattccgagattcacctgtttatgatgatg |
7257800 |
T |
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