View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2022_high_1 (Length: 709)
Name: NF2022_high_1
Description: NF2022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2022_high_1 |
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| [»] scaffold1366 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 592; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 36 - 693
Target Start/End: Complemental strand, 31214084 - 31213426
Alignment:
| Q |
36 |
aacacaccgtgataatgagatcttgattttttgtagtactaatatatttcttccaaatattgtttttcagcaaa-----ggagtgttctatttagttaca |
130 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31214084 |
aacacaccatgataatgagatcttgattttttgtagtactaatatatttcttccaaatattgtttttcagcaaattaaaggagtgttctatttagttaca |
31213985 |
T |
|
| Q |
131 |
taaacttattataatttttaacaatttgcagttttccagtacaaccccacaaacttataatcacaatgaggatatgagaagaaggggtttcaaccccaca |
230 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31213984 |
taaa-ttattataatttttaacaatttgcagttttccagtacaaccccacaaacttataatcacaatgaggatatgagaagaaggggtttcaaccccaca |
31213886 |
T |
|
| Q |
231 |
agactgagagagaggaccggtcctcagacatcaactcctttctaggaccgttccaaagtgtctgggaaggtagagtcattctaattgtgaggagggagag |
330 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31213885 |
agac--agagagaggaccgttcctcagacatcaactcctttctaggaccgttccaaagtgtctgggaaggtagagtcattctaattgtgaggagggagag |
31213788 |
T |
|
| Q |
331 |
aaccgtgaaattaacacggtctcatcccttactccaatgggattcacactatgggagttccttttacttgaccaacttatttggatatccattaccatcc |
430 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31213787 |
aaccgtgaaattgacacggtctcatcccttactccaatgggattcacactatgggagttccttttacttgaccaacttatttggatttccattaccatcc |
31213688 |
T |
|
| Q |
431 |
ccctattgattggcattgtcttccaattagtgggttgatgcagcactgaaagcgagaagtaggcataactgaaatatgtttatactaagggatggaggga |
530 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
31213687 |
ccctattgattggcattgtcttccaattagtgggttgatgcagcactgaaagcgagaagtaggcataactgaaatatgtttatactaa-ggacggaggga |
31213589 |
T |
|
| Q |
531 |
gtacttgttttgaaccgaggaatttccaccgtacatcatttgtgggtttaattgctccaaatcctccttaaatatccatcgataaccacaatttttgacc |
630 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31213588 |
gtacttgttttgaaccgaggaatttccaccgtacatcatttgtgggtttaattgctccaaatcctccttaaatatccatcgataacctcaatttttgacc |
31213489 |
T |
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| Q |
631 |
tctaaatgcaatctggggggatgcacagcataaccttccaatttaataattctctggggaaag |
693 |
Q |
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| T |
31213488 |
tctaaatgcaatctggggggatgcacagcataaccttccaatttaataattctctggggaaag |
31213426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 36 - 243
Target Start/End: Complemental strand, 31201545 - 31201329
Alignment:
| Q |
36 |
aacacaccgtgataatgagatcttgattttttgtagtactaatatatttcttccaaatattgtttttcagcaaaggagtgttctatttagttacataaac |
135 |
Q |
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|||||||| |||||||||||||||| |||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31201545 |
aacacaccatgataatgagatcttggttttttt--gtagtaatatagttcttccaaatattgtttttcagcaaaggagtgttctatttagttacatgaac |
31201448 |
T |
|
| Q |
136 |
ttattataattttt-aacaatttgcagttttccagtacaacc----------ccacaaacttataatcacaatgaggatatgagaagaaggggtttcaac |
224 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |||||||||||||| | |||| |
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| T |
31201447 |
ttattataatttttgaacaatttgcagttttccattacaaccacatagaagacaacaaacttataatcacaatgaggacatgagaagaaggggctacaac |
31201348 |
T |
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| Q |
225 |
cccacaagactgagagaga |
243 |
Q |
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| T |
31201347 |
cccacaagaatcagagaga |
31201329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 541 - 641
Target Start/End: Complemental strand, 31248002 - 31247902
Alignment:
| Q |
541 |
tgaaccgaggaatttccaccgtacatcatttgtgggtttaattgctccaaatcctccttaaatatccatcgataaccacaatttttgacctctaaatgca |
640 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||| || |||| |||||||||||||||||| |||||||||||||||| ||||| ||||||| |
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| T |
31248002 |
tgaactgaggaatttccactgtacatcatttgtgggtttaaatgttccagatcctccttaaatatccaatgataaccacaattttttacctccaaatgca |
31247903 |
T |
|
| Q |
641 |
a |
641 |
Q |
| |
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| T |
31247902 |
a |
31247902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 564 - 641
Target Start/End: Original strand, 31264087 - 31264164
Alignment:
| Q |
564 |
catcatttgtgggtttaattgctccaaatcctccttaaatatccatcgataaccacaatttttgacctctaaatgcaa |
641 |
Q |
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||||||||| | |||||| || |||| |||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
31264087 |
catcatttgcgcgtttaaatgttccagatcctccttaaatatccaatgataaccacaatttttgacctccaaatgcaa |
31264164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 569 - 641
Target Start/End: Complemental strand, 31304872 - 31304800
Alignment:
| Q |
569 |
tttgtgggtttaattgctccaaatcctccttaaatatccatcgataaccacaatttttgacctctaaatgcaa |
641 |
Q |
| |
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||||||||||||||||||||| |||||||| ||||||||||| |||||||| || || ||||| |||||||| |
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| T |
31304872 |
tttgtgggtttaattgctccagatcctcctcaaatatccatctgtaaccacagttctttacctcaaaatgcaa |
31304800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 2e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 36 - 235
Target Start/End: Complemental strand, 13605671 - 13605464
Alignment:
| Q |
36 |
aacacaccgtgataatgagatcttgattttttgtagtactaatatatttcttccaaatattgtttttcagcaaaggagtgttctatttagttacataaac |
135 |
Q |
| |
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|||||||| |||||||||||||| |||||||| ||||| |||| ||| ||||||||||||||||||||||||||| |||||||||| |||||| ||| |
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| T |
13605671 |
aacacaccatgataatgagatctcgattttttatagta---atatcgttcctccaaatattgtttttcagcaaaggagcgttctatttaattacatgaac |
13605575 |
T |
|
| Q |
136 |
ttattataattttt-aacaatttgcagttttccagtacaacc----------ccacaaacttataatcacaatgaggatatgagaagaaggggtttcaac |
224 |
Q |
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|||||||||||||| || |||||||||||||||| ||||||| | |||||||||||||||||||||| | ||||||||||||| ||||||| |
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| T |
13605574 |
ttattataatttttgaataatttgcagttttccattacaaccacatagaagacaacaaacttataatcacaatgagaacatgagaagaagggctttcaac |
13605475 |
T |
|
| Q |
225 |
cccacaagact |
235 |
Q |
| |
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||||||||||| |
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| T |
13605474 |
cccacaagact |
13605464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 536 - 621
Target Start/End: Complemental strand, 13615741 - 13615656
Alignment:
| Q |
536 |
tgttttgaaccgaggaatttccaccgtacatcattt--gtgggtttaattgctccaaatcctccttaaatatccatcgataaccacaa |
621 |
Q |
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|||||||||| |||||||||||| | || ||||||| | ||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
13615741 |
tgttttgaactgaggaatttccaac-ta-atcatttgcgggggtttaattgctccaaatcctcctcaaatatccaacgataaccacaa |
13615656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1366 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1366
Description:
Target: scaffold1366; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 411
Target Start/End: Original strand, 1649 - 1711
Alignment:
| Q |
349 |
gtctcatcccttactccaatgggattcacactatgggagttccttttacttgaccaacttatt |
411 |
Q |
| |
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|||||||| | |||||||| ||| |||||||| |||||||||||| |||||||||| |||||| |
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|
| T |
1649 |
gtctcatctcctactccaaggggcttcacactctgggagttccttctacttgaccagcttatt |
1711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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