View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2022_high_2 (Length: 398)
Name: NF2022_high_2
Description: NF2022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2022_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 21 - 226
Target Start/End: Complemental strand, 41659735 - 41659530
Alignment:
| Q |
21 |
actattgacaccaattcttgtgatccctaaggaaggaaaacataaaactgaaagttcttttcacttggaaatatactgtagagaaaactgtaaatggaaa |
120 |
Q |
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| T |
41659735 |
actattgacaccaattcttgtcatccctaaggaaggaaaacataaaactgaaagttcttttcacttggaaatatgctgtagagaaaactgtaaatggaaa |
41659636 |
T |
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| Q |
121 |
ttaacttgggaaaccctacttctaatgatcgtaaaagtttcccttctattctcacggcctgtttcttgacgtgaatatgaacaaattattggcctgcttt |
220 |
Q |
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| T |
41659635 |
ttaacttgggaaaccctacttctaatgatcgtaaaagtttcccttctattctcacggcctgtttcttgacgtgaatatgaacaaattattggcctgcttt |
41659536 |
T |
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| Q |
221 |
gcttgg |
226 |
Q |
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|||||| |
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| T |
41659535 |
gcttgg |
41659530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 41656735 - 41656636
Alignment:
| Q |
1 |
caaagtagaccctaaatcttactattgacaccaattcttgtgatccctaaggaaggaaaacataaaactgaaagttcttttcacttggaaatatactgta |
100 |
Q |
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||||||||| |||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
41656735 |
caaagtagatcctaaatcttactattactaccaattctcttcatccctaaggaaggaaaacataaaactaaaagttcttttcatgtggaaatatactgta |
41656636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 341 - 384
Target Start/End: Complemental strand, 41659466 - 41659423
Alignment:
| Q |
341 |
aaaaaagccctatattatagtttgctttaatttcatgctgattt |
384 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41659466 |
aaaaaagccctatattatagtttgcgttaatttcatgctgattt |
41659423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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