View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2022_high_5 (Length: 219)
Name: NF2022_high_5
Description: NF2022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2022_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 31054770 - 31054587
Alignment:
| Q |
16 |
aagcaaaggaaggggaagaaaaacttacataatgacggcaaacttcacatttaggatggctcaattctttaaaacaatacttgtgatatggatgcttccc |
115 |
Q |
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| T |
31054770 |
aagcaaaggaaggggaagaaaaacttacataatgacggcaaacttcacatttaggatggctcaattctttaaaacaatacttgtgatatggatgcttccc |
31054671 |
T |
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| Q |
116 |
tgacaaagaaaacttggatcaacagaaacaaaaggccgtaagagatggataaaagagaagtgttaaaatcaatttgtttgtaag |
199 |
Q |
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| T |
31054670 |
tgacaaagaaaacttggatcaacagaaacaaaaggccgtaagagatggataaaagagaagtgttaaaatcaatttgtctgtaag |
31054587 |
T |
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Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 53 - 148
Target Start/End: Original strand, 34744012 - 34744107
Alignment:
| Q |
53 |
gcaaacttcacatttaggatggctcaattctttaaaacaatacttgtgatatggatgcttccctgacaaagaaaacttggatcaacagaaacaaaa |
148 |
Q |
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| T |
34744012 |
gcaaacttcacattttgggtgagtcaactctttaaaacaagatttgtgatatggatgcttccctgacaaagaaaacttggatcaacaaaaaaaaaa |
34744107 |
T |
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