View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2022_low_3 (Length: 382)
Name: NF2022_low_3
Description: NF2022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2022_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 33 - 364
Target Start/End: Original strand, 24563559 - 24563890
Alignment:
| Q |
33 |
cataggagatatcttccaaagcttttgagataacagtgtgatccgaaccaattccaagaaggttcatagcttgaatcagagcaaatgtattggaaaagcc |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24563559 |
cataggagatatcttccaaagcttttgagataacagtgtgatccgaaccaattccaagaaggttcataacttgaatcagagcaaatgtattggaaaagcc |
24563658 |
T |
|
| Q |
133 |
cttagcagccataccacgatcaactcattatctttagttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaat |
232 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24563659 |
cttagtagccataccacgatcaactcattatctttagttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaat |
24563758 |
T |
|
| Q |
233 |
ctcaaactacatccgtaattaagaaaccaaaccaacaatggtttagataagttcgcaactgctttaatttctagactcacgtaaatccctgtatgcccgt |
332 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24563759 |
ctcaaactacatccgtaattaagaaaccaaaccaacaatggtttagataagttcgcaactgctttaatttctagactcacgtaaatccctgtatgcccgt |
24563858 |
T |
|
| Q |
333 |
tgaaatcattaattccaatcattctctcattt |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
24563859 |
tgaaatcattaattccaatcattctctcattt |
24563890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 169 - 364
Target Start/End: Complemental strand, 45536060 - 45535860
Alignment:
| Q |
169 |
gttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaatctcaaactacatccgtaattaagaaaccaaaccaac |
268 |
Q |
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|||||||||||||||||||||| ||||||||||| | ||||| ||||||||||||||||||||| || | |||||||||||||| ||||||||||||||| |
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| T |
45536060 |
gttgagcatatcttcttggatttcctccctttttctattctaataatagtgtatcattaaaaatttcgacctacatccgtaattcagaaaccaaaccaac |
45535961 |
T |
|
| Q |
269 |
-aatggtttagataagttcgcaactgct----ttaatttctagactcacgtaaatccctgtatgcccgttgaaatcattaattccaatcattctctcatt |
363 |
Q |
| |
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|||||||||||||||||| ||| || | |||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45535960 |
aaatggtttagataagttcccaagtgttttaattaatttctagactcatgtaaatccttgtatacccgttgaaatcattaattccaatcattctctcatt |
45535861 |
T |
|
| Q |
364 |
t |
364 |
Q |
| |
|
| |
|
|
| T |
45535860 |
t |
45535860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 58 - 155
Target Start/End: Original strand, 44337428 - 44337525
Alignment:
| Q |
58 |
tgagataacagtgtgatccgaaccaattccaagaaggttcatagcttgaatcagagcaaatgtattggaaaagcccttagcagccataccacgatcaa |
155 |
Q |
| |
|
||||||| |||||||||||||||||| | ||||||||| | || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
44337428 |
tgagatagcagtgtgatccgaaccaaattcaagaaggtgcgtaacttgaatcagagcaaatgtattggaaaagcccttagtagccataccacgatcaa |
44337525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 311
Target Start/End: Original strand, 44337629 - 44337779
Alignment:
| Q |
161 |
tatctttagttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaatctcaaactacatccgtaattaagaaa-c |
259 |
Q |
| |
|
|||||| |||||| |||| ||||||||||||||| ||||| ||||||| |||||||||||||||||| | | || || || |||||| ||||| | |
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| T |
44337629 |
tatcttcagttgaacatagtttcttggattccctcacttttc-tgttctaataatagtgtatcattaaattttttgaaatatatttgtaattcagaaaac |
44337727 |
T |
|
| Q |
260 |
caaaccaacaatggtttagataagttcgcaactgctttaatttctagactca |
311 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| || ||||| ||||||||||| |
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|
| T |
44337728 |
caaactaacaatggtttagataagttcccaagtgttttaacttctagactca |
44337779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 45536235 - 45536177
Alignment:
| Q |
97 |
catagcttgaatcagagcaaatgtattggaaaagcccttagcagccataccacgatcaa |
155 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
45536235 |
cataacttgaatcagagcaaatgtattggaaaagcccttggtagctataccacgatcaa |
45536177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 152 - 364
Target Start/End: Original strand, 9798586 - 9798792
Alignment:
| Q |
152 |
tcaactcattatctttagttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaatctcaaactacatccgtaat |
251 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||| | || |||| |||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
9798586 |
tcaactccttatctttagttgagcatatcttcttggattccctccatttgtctgctctaataatagtgtatcattaaaaatctcgaactacatccgtaat |
9798685 |
T |
|
| Q |
252 |
taagaaaccaaaccaacaatggtttagataagttcgcaactgctttaatttctagactca--cgtaaatccctgtatgcccgttgaaatcattaattcca |
349 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||| || |||| |||||||| ||| ||||||||||| ||||||||||||||| | |
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|
| T |
9798686 |
taagaaaccaaatcaacaatggtttagataagttcccaagtgttttagtttctagattcattcgtaaatccct--------tttgaaatcattaatttct |
9798777 |
T |
|
| Q |
350 |
atcattctctcattt |
364 |
Q |
| |
|
||||||||||||||| |
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|
| T |
9798778 |
atcattctctcattt |
9798792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 271
Target Start/End: Complemental strand, 19190303 - 19190201
Alignment:
| Q |
169 |
gttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaatctcaaactacatccgtaattaagaaaccaaaccaac |
268 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| ||||||| ||||||| |||||||||| | || || ||||| | ||||| |||||| |||||||| |
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| T |
19190303 |
gttgagcatagcttcttggattccctcactttttctgttctaataatagtacatcattaaaattttcgaaatacattcataattcagaaactaaaccaac |
19190204 |
T |
|
| Q |
269 |
aat |
271 |
Q |
| |
|
||| |
|
|
| T |
19190203 |
aat |
19190201 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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