View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2022_low_4 (Length: 375)
Name: NF2022_low_4
Description: NF2022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2022_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 269 - 359
Target Start/End: Complemental strand, 7919972 - 7919882
Alignment:
| Q |
269 |
aatcagatagtctatataacttaatattaatttttctttacaaaatataataatcattattgaattaaaaaattgcaccctttgaatcaag |
359 |
Q |
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| T |
7919972 |
aatcagatagtctatataacttaatactaatttttctttacaaaatataataatcattattgaattaagaaattgcaccctttgaatcaag |
7919882 |
T |
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Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 7935018 - 7935102
Alignment:
| Q |
8 |
tgaaatgaatacaatcttcattaaccaagtcaattcaatttggcttgttggtctcaatattggaaacccttggagggaatgagag |
92 |
Q |
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| T |
7935018 |
tgaaattaaaacaatcttcattaaccaagtcaattcaatatggcttgttggtctcaatattggaagcactttgagggaatgagag |
7935102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 7920047 - 7919972
Alignment:
| Q |
157 |
aatcatgcaaccatcaatacaaatcgttggattaaaaataacatgattatcttgttcaggctttgtattttgaatttga |
235 |
Q |
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| T |
7920047 |
aatcatgcaaccgtcaatatatatcgtatgattaaaaataac---attatcttgttatgactttgtattttgaatttga |
7919972 |
T |
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