View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2022_low_5 (Length: 365)
Name: NF2022_low_5
Description: NF2022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2022_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 31054748 - 31055102
Alignment:
| Q |
1 |
tttttcttccccttcctttgctttttcacaatgtccacttcaatagttaaggtcatcaaatgacagaaccaactagttttctcatgacatcttaaatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
31054748 |
tttttcttccccttcctttgctttttcacaatgtccacttcaatagttaaggtcattaaatgacagaacgaactagttttctcatgacatcttaaatgtg |
31054847 |
T |
|
| Q |
101 |
ttgaaacagaaatcgtcgctaaaatggtttcatcctatttatttctaatcatttagaagattatagaagttctgtttatcacattaatcaatcatttgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31054848 |
ttgaaacagaaatcgtcgctaaaatggtttcatcctatttatttctaatcaattagaagattatagaagttctgtttatcacattaatcaatcatatgat |
31054947 |
T |
|
| Q |
201 |
atggcatcatagcttaccattgatatatcagaagactagcatagtaaaaaacattatatcctttgtatctattactattgaactataatctataatacat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31054948 |
atggcatcatagcttaccattgatatatcagaagactagcatagtaaaaaacattatatcctttgtatctattactattgaactataatctataatacat |
31055047 |
T |
|
| Q |
301 |
gttaatttgtttcacttgcagatacctataaatggttctggtttgattgagtata |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31055048 |
gttaatttgtttcacttgcagatacctataaatggttctggtttgattgagtata |
31055102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University