View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20230_high_3 (Length: 361)
Name: NF20230_high_3
Description: NF20230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20230_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 6226126 - 6226463
Alignment:
| Q |
1 |
gaaggagataaggaatannnnnnncaaaagatagaacttgtaaacataacagtgttaaataacttcctaatcaaacaaatttgataaaattcaagtaaca |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6226126 |
gaaggagataaggaatatttttttcaaaagatagaacttgtaaacataacagtgttaaataacttcctaatcaaacaaatttgataaaattcaagtaaca |
6226225 |
T |
|
| Q |
101 |
tcaaatcagatatgttagatttgtaatgagtaatatataaatggaaagaatatatgtttttacaaattatcaaagatagtacttgtccaaaagtaaaatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
6226226 |
tcaaatcagatatgttagatttgtaatgagtaatatataaatg--aagaatatatgtttttacaaaatatcaaagatattacttgtccaaaagtaaaatc |
6226323 |
T |
|
| Q |
201 |
cccaataactttacagaagagcaaaatttaactcatcagagcaaatcttcaaaattgcatggcagctcctctataaccatattgtagaatttctgaatat |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6226324 |
cccaataactttacagaagaacaaaatttaactcatcagagcaaatcttcaaaattgcatggcagctcctctataaccatattgtagaatttctgaatat |
6226423 |
T |
|
| Q |
301 |
ctatcagcattccagcttcatcctctgtcatgaagtttat |
340 |
Q |
| |
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| T |
6226424 |
ctatgatcatactagtctcatcctctgtcatgaagtttat |
6226463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 201 - 340
Target Start/End: Original strand, 6233582 - 6233721
Alignment:
| Q |
201 |
cccaataactttacagaagagcaaaatttaactcatcagagcaaatcttcaaaattgcatggcagctcctctataaccatattgtagaatttctgaatat |
300 |
Q |
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| T |
6233582 |
cccaataactttacataagaacaaaaactaactcatcagagtaaatcttcaaaattacatggcagctcctctataaccatgttgtagaatttctgaatat |
6233681 |
T |
|
| Q |
301 |
ctatcagcattccagcttcatcctctgtcatgaagtttat |
340 |
Q |
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| T |
6233682 |
ctatgagcatattagcctcatcctctatcatgaagtttat |
6233721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 6249090 - 6249169
Alignment:
| Q |
222 |
caaaatttaactcatcagagcaaatcttcaaaattgcatggcagctcctctataaccatattgtagaatttctgaatatc |
301 |
Q |
| |
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||||| |||||||||||||||||||| ||| ||| ||||||||||||||||| || ||||||||||||||||||||| |
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| T |
6249090 |
caaaaattaactcatcagagcaaatcagcaacatttgatggcagctcctctatagtcacattgtagaatttctgaatatc |
6249169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 6240533 - 6240645
Alignment:
| Q |
25 |
caaaagatagaacttgtaaacataacagtgttaaataacttcctaatcaaacaaatttgata------aaattcaagtaacatcaaatcagatatgttag |
118 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||| |||| |||||||||||| | ||| ||| |||||||||||||||| |||||| |
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| T |
6240533 |
caaaagatagcacttgtaat-ataacagtgttaaataacttcttaattaaacaaatttgagagaatcccaatccaaataacatcaaatcagatctgttag |
6240631 |
T |
|
| Q |
119 |
atttgtaatgagta |
132 |
Q |
| |
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|||| | ||||||| |
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|
| T |
6240632 |
atttctcatgagta |
6240645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 301
Target Start/End: Original strand, 6240694 - 6240765
Alignment:
| Q |
230 |
aactcatcagagcaaatcttcaaaattgcatggcagctcctctataaccatattgtagaatttctgaatatc |
301 |
Q |
| |
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||||||| |||||||||| ||||||| |||||||||||||||||| || |||| ||| |||||| ||||| |
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| T |
6240694 |
aactcatgagagcaaatcagcaaaatttgatggcagctcctctataatcacattggagagtttctggatatc |
6240765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 209 - 340
Target Start/End: Complemental strand, 17545799 - 17545668
Alignment:
| Q |
209 |
ctttacagaagagcaaaatttaactcatcagagcaaatcttcaaaattgcatggcagctcctctataaccatattgtagaatttctgaatatctatcagc |
308 |
Q |
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||||||| |||| ||||| | ||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
17545799 |
ctttacataagaacaaaaatgaactcatcagagcaactcatcaaaattatatggcagctcctctataaccatattgtagaatttctgaatatctatgatc |
17545700 |
T |
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| Q |
309 |
attccagcttcatcctctgtcatgaagtttat |
340 |
Q |
| |
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||| ||| ||||||| |||||| |||||||| |
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| T |
17545699 |
attgtagcctcatcctttgtcataaagtttat |
17545668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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