View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20230_high_4 (Length: 354)

Name: NF20230_high_4
Description: NF20230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20230_high_4
NF20230_high_4
[»] chr1 (4 HSPs)
chr1 (17-344)||(31302284-31302611)
chr1 (23-101)||(25275089-25275167)
chr1 (23-91)||(25244983-25245051)
chr1 (23-91)||(46244306-46244374)
[»] chr7 (3 HSPs)
chr7 (17-343)||(24906905-24907235)
chr7 (23-91)||(24823039-24823107)
chr7 (26-101)||(18264575-18264650)
[»] chr4 (1 HSPs)
chr4 (24-107)||(41189587-41189670)
[»] scaffold0102 (1 HSPs)
scaffold0102 (23-101)||(14385-14463)
[»] chr6 (1 HSPs)
chr6 (23-101)||(26857966-26858044)
[»] chr5 (5 HSPs)
chr5 (23-101)||(5708120-5708198)
chr5 (23-101)||(14462774-14462852)
chr5 (34-91)||(9272896-9272953)
chr5 (25-101)||(8933907-8933983)
chr5 (23-91)||(10369651-10369719)
[»] chr2 (2 HSPs)
chr2 (23-101)||(17893953-17894031)
chr2 (23-101)||(43323718-43323796)
[»] chr3 (1 HSPs)
chr3 (23-91)||(41397773-41397841)


Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 344
Target Start/End: Original strand, 31302284 - 31302611
Alignment:
Q  17 acataagggtggcaatgtgatccaccaaattcatatccatccaatccctcgagtacaaaatccatctaatccatctaccaaacaattttttcttcttatt 116  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  31302284 acataagggtggcaatgtgatccaccaaatccatatccatccaatccctcgagtacaaaatccatctaattcatctaccaaacaatttttccttcttatt 31302383  T
Q  117 agaaacgtcgttacatgcgactctagattataaatgggacgtttaaccttgccctttcgtccataattttcttcttcttattagaaacgtattccacagc 216  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31302384 agaaatgtcgttacatgcgactctagattataaatgggacgtttcaccttgccctttcgtccataattttcttcttcttattagaaacgtattccacagc 31302483  T
Q  217 ctctctctcagccaaatgcttacttctatttgcatataacttgcgtgttaaggctgcgtactcctcatccaaggcaacaatacgtctataataatcatct 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31302484 ctctctctcagccaaatgcttacttctatttgcatataacttgcgtgttaaggctgcgtactcctcatccaaggcaacaatacgtctataataatcatct 31302583  T
Q  317 tcatcttgggttaagttttgcatctctg 344  Q
    ||||||||||||||||||||||||||||    
T  31302584 tcatcttgggttaagttttgcatctctg 31302611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 25275089 - 25275167
Alignment:
Q  23 gggtggcaatgtgatccaccaaattcatatccatccaatccctcgagtacaaaatccatctaatccatctaccaaacaa 101  Q
    |||||||||| |||||||  | ||||||||||||||||||| || | ||||||||||||| |||||||| | |||||||    
T  25275089 gggtggcaatatgatccatgagattcatatccatccaatccatccactacaaaatccatccaatccatccatcaaacaa 25275167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 25244983 - 25245051
Alignment:
Q  23 gggtggcaatgtgatccaccaaattcatatccatccaatccctcgagtacaaaatccatctaatccatc 91  Q
    |||||||||| |||||||  | || |||||||||||||||| || | ||||||||||||| ||||||||    
T  25244983 gggtggcaatatgatccatgagatccatatccatccaatccatccactacaaaatccatcaaatccatc 25245051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 46244374 - 46244306
Alignment:
Q  23 gggtggcaatgtgatccaccaaattcatatccatccaatccctcgagtacaaaatccatctaatccatc 91  Q
    ||||||||||  ||||||  |||| ||||||||||| |||| || | ||||||||||||| ||||||||    
T  46244374 gggtggcaattagatccatgaaatccatatccatccgatccatccactacaaaatccatccaatccatc 46244306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 24907235 - 24906905
Alignment:
Q  17 acataagggtggcaatgtgatccaccaaattcatatccatccaatccctcgagtacaaaatccatctaatccatctaccaaacaattttt--tcttctta 114  Q
    |||||||||||||||||||||||||||||| ||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||    
T  24907235 acataagggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaatttttcttcttctta 24907136  T
Q  115 t--tagaaacgtcgttacatgcgactctagattataaatgggacgtttaaccttgccctttcgtccataattttcttcttcttattagaaacgtattcca 212  Q
    |  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  24907135 tattagaaacgtcgttacatgcaactctagattataaatgggacgtttaaccttgccctttcgtccataattttcttcttcttattagaaatgtaatcca 24907036  T
Q  213 cagcctctctctcagccaaatgcttacttctatttgcatataacttgcgtgttaaggctgcgtactcctcatccaaggcaacaatacgtctataataatc 312  Q
    |||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24907035 cagcttctctctcaaccaaatgcttacttctattttcatataacttgcgtgttaaggctgcgtactcctcatccaaggcaacaatacgtctataataatc 24906936  T
Q  313 atcttcatcttgggttaagttttgcatctct 343  Q
    |||||||||||||||||| ||||||||||||    
T  24906935 atcttcatcttgggttaaattttgcatctct 24906905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 24823107 - 24823039
Alignment:
Q  23 gggtggcaatgtgatccaccaaattcatatccatccaatccctcgagtacaaaatccatctaatccatc 91  Q
    |||||||||| |||||||  | || ||||||||||||||| ||| | || |||||||||||||||||||    
T  24823107 gggtggcaatatgatccatgagatccatatccatccaatctctctactataaaatccatctaatccatc 24823039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 18264650 - 18264575
Alignment:
Q  26 tggcaatgtgatccaccaaattcatatccatccaatccctcgagtacaaaatccatctaatccatctaccaaacaa 101  Q
    ||||||| |||||||  | || |||||||||||||||| || | ||||||||||||| |||||||| | |||||||    
T  18264650 tggcaatatgatccatgagatccatatccatccaatccatccactacaaaatccatccaatccatccatcaaacaa 18264575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 41189587 - 41189670
Alignment:
Q  24 ggtggcaatgtgatccaccaaattcatatccatccaatccctcgagtacaaaatccatctaatccatctaccaaacaatttttt 107  Q
    ||||||||| |||||||  | || |||||||||||||||| || | ||||||||||||| |||||||| | ||||||| |||||    
T  41189587 ggtggcaatatgatccatgagatccatatccatccaatccatccactacaaaatccatccaatccatccatcaaacaaattttt 41189670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 14463 - 14385
Alignment:
Q  23 gggtggcaatgtgatccaccaaattcatatccatccaatccctcgagtacaaaatccatctaatccatctaccaaacaa 101  Q
    |||||||||| |||||||  | || |||||||||||||||| || | ||||||||||||| |||||||| | |||||||    
T  14463 gggtggcaatatgatccatgagatccatatccatccaatccatccactacaaaatccatccaatccatccatcaaacaa 14385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 26857966 - 26858044
Alignment:
Q  23 gggtggcaatgtgatccaccaaattcatatccatccaatccctcgagtacaaaatccatctaatccatctaccaaacaa 101  Q
    |||||||||| |||||||  | || ||||| |||||||||| || | ||||||||||||| |||||||||| |||||||    
T  26857966 gggtggcaatatgatccatgagatccatattcatccaatccatccactacaaaatccatccaatccatctatcaaacaa 26858044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 5708120 - 5708198
Alignment:
Q  23 gggtggcaatgtgatccaccaaattcatatccatccaatccctcgagtacaaaatccatctaatccatctaccaaacaa 101  Q
    |||||||||| |||||||  | || |||||||||||||||  || | ||||||||||||| |||||||| | |||||||    
T  5708120 gggtggcaatatgatccatgagatccatatccatccaatctatccactacaaaatccatccaatccatccatcaaacaa 5708198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 14462774 - 14462852
Alignment:
Q  23 gggtggcaatgtgatccaccaaattcatatccatccaatccctcgagtacaaaatccatctaatccatctaccaaacaa 101  Q
    |||||||||  ||||||| |||||||||||||||||||||| |  |  | || ||||||| |||||||| |||||||||    
T  14462774 gggtggcaaaatgatccatcaaattcatatccatccaatccattcaccataatatccatccaatccatccaccaaacaa 14462852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 9272953 - 9272896
Alignment:
Q  34 tgatccaccaaattcatatccatccaatccctcgagtacaaaatccatctaatccatc 91  Q
    ||||||| || || |||||||||||||||| || | ||||||||||||| ||||||||    
T  9272953 tgatccatcagatccatatccatccaatccatccactacaaaatccatccaatccatc 9272896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 8933983 - 8933907
Alignment:
Q  25 gtggcaatgtgatccaccaaattcatatccatccaatccctcgagtacaaaatccatctaatccatctaccaaacaa 101  Q
    |||||||| |||||||  | || ||||| |||||||||| || | ||||||||||||| |||||||| | |||||||    
T  8933983 gtggcaatatgatccatgagatccatattcatccaatccatccactacaaaatccatccaatccatccatcaaacaa 8933907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 10369719 - 10369651
Alignment:
Q  23 gggtggcaatgtgatccaccaaattcatatccatccaatccctcgagtacaaaatccatctaatccatc 91  Q
    ||||||||||  ||||||  |||| ||||||||||| |||| || | ||||||||||||| ||||||||    
T  10369719 gggtggcaattagatccatgaaatccatatccatccgatccatccactacaaaatccatccaatccatc 10369651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 17893953 - 17894031
Alignment:
Q  23 gggtggcaatgtgatccaccaaattcatatccatccaatccctcgagtacaaaatccatctaatccatctaccaaacaa 101  Q
    ||||||||||  |||||| ||||| ||||| |||||||||| || |  | || ||||||| ||||||||||||||||||    
T  17893953 gggtggcaataggatccatcaaatccatatacatccaatccatccaccataatatccatccaatccatctaccaaacaa 17894031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 43323718 - 43323796
Alignment:
Q  23 gggtggcaatgtgatccaccaaattcatatccatccaatccctcgagtacaaaatccatctaatccatctaccaaacaa 101  Q
    |||||||||| |||||||  | ||  ||||||||||||||| || | ||||||||||||| |||||||| | |||||||    
T  43323718 gggtggcaatatgatccatgagatctatatccatccaatccatccactacaaaatccatccaatccatccatcaaacaa 43323796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 41397773 - 41397841
Alignment:
Q  23 gggtggcaatgtgatccaccaaattcatatccatccaatccctcgagtacaaaatccatctaatccatc 91  Q
    ||||||||||  ||||||  |||| ||||||||||| |||| || | ||||||||||||| ||||||||    
T  41397773 gggtggcaattagatccatgaaatccatatccatccgatccatccactacaaaatccatccaatccatc 41397841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University