View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20230_low_10 (Length: 250)
Name: NF20230_low_10
Description: NF20230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20230_low_10 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 13219538 - 13219772
Alignment:
| Q |
1 |
ctcaagctgcgttatatactcatcatcaatacattgcaggctttattatgacaggggcttttgctcatggagcgatattttttattcgcgattataatcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
13219538 |
ctcaagctgcgttatatactcatcatcaatacattgcaggatttattatgacaggggcttttgctcatggagcgatattttttattcgggattacaatcc |
13219637 |
T |
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| Q |
101 |
cgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttccatact |
200 |
Q |
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| T |
13219638 |
cgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttccatact |
13219737 |
T |
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| Q |
201 |
ttgggactttatgtccataatgatgtcatgcttgc |
235 |
Q |
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| T |
13219738 |
ttgggactttatgtccataatgatgtcatgcttgc |
13219772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 47842228 - 47842288
Alignment:
| Q |
56 |
ggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggat |
116 |
Q |
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| T |
47842228 |
ggcttttgcttatggagcgatattctttattcgagattgcaatcccgaatagaatgaggat |
47842288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 47842111 - 47842150
Alignment:
| Q |
1 |
ctcaagctgcgttatatactcatcatcaatacattgcagg |
40 |
Q |
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| T |
47842111 |
ctcaaactgcgttatatactcatcatcaatacattgcagg |
47842150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 47842192 - 47842226
Alignment:
| Q |
1 |
ctcaagctgcgttatatactcatcatcaatacatt |
35 |
Q |
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| T |
47842192 |
ctcaagctgcgttatatactcatcatcaatacatt |
47842226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 10996451 - 10996680
Alignment:
| Q |
1 |
ctcaagctgcgttatatactcatcatcaatacattgcaggctttattatgacaggggcttttgctcatggagcgatattttttattcgcgattataatcc |
100 |
Q |
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||||||||||| |||||||||||||||||| ||||||||| |||||||||||| | ||||||||||||||| |||||||||| ||| | ||||| ||||| |
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| T |
10996451 |
ctcaagctgcggtatatactcatcatcaattcattgcaggatttattatgacatgagcttttgctcatggaacgatattttt-atttgagattacaatcc |
10996549 |
T |
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| Q |
101 |
cgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttccatact |
200 |
Q |
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| T |
10996550 |
cgaacataatgagaataatgtattggcag--atgttagagcacaaagaagctatcatatcccatttaagttgagccatcctatttctagggttccatact |
10996647 |
T |
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| Q |
201 |
ttgggactttatgtccataatgatgtcatgctt |
233 |
Q |
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| T |
10996648 |
ttgggactttatgtccataatgatgttatgctt |
10996680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3065839 - 3065875
Alignment:
| Q |
1 |
ctcaagctgcgttatatactcatcatcaatacattgc |
37 |
Q |
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|||||||||| ||||||| |||||||||||||||||| |
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| T |
3065839 |
ctcaagctgccttatatagtcatcatcaatacattgc |
3065875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 238171 - 237937
Alignment:
| Q |
1 |
ctcaagctgcgttatatactcatcatcaatacattgcaggctttattatgacaggggcttttgctcatggagcgatattttttattcgcgattataatcc |
100 |
Q |
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|
|||||||||| |||||||||||||| ||||| ||||| || || || |||||||||||||||||||||||||| || ||||| ||| | ||||| ||||| |
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| T |
238171 |
ctcaagctgctttatatactcatcaccaatatattgcggggttcatcatgacaggggcttttgctcatggagctatttttttcattagggattacaatcc |
238072 |
T |
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| Q |
101 |
cgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttccatact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||| ||||| || |||||||| |
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| T |
238071 |
ggaacagaatgaggataatgtattggcaagaatgttagaccataaagaagctatcatatctcatttaagttgggctagcctctttctaggattccatacc |
237972 |
T |
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| Q |
201 |
ttgggactttatgtccataatgatgtcatgcttgc |
235 |
Q |
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||||| |||||||| ||||| || ||||||||||| |
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| T |
237971 |
ttgggcctttatgttcataacgacgtcatgcttgc |
237937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18013482 - 18013446
Alignment:
| Q |
1 |
ctcaagctgcgttatatactcatcatcaatacattgc |
37 |
Q |
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|||||||||| ||||||| |||||||||||||||||| |
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| T |
18013482 |
ctcaagctgccttatatagtcatcatcaatacattgc |
18013446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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