View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20230_low_11 (Length: 246)
Name: NF20230_low_11
Description: NF20230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20230_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 5302418 - 5302512
Alignment:
| Q |
146 |
gagttatgttttaccaatttcatttattgtcagtcaaaagttccaaaagaaaaaattatatccttttggtcaatttattcataagcttcctatgc |
240 |
Q |
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| T |
5302418 |
gagttatgttttaccaatttcatttattgtcagtcaaaagttccaaaagaaaaaattatatctttttggtcaatttattcataagcttcctatgc |
5302512 |
T |
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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 5302273 - 5302335
Alignment:
| Q |
1 |
caaactcaaaattacaattttcaatacacaatgacttctcaagactcaaacaccctttatata |
63 |
Q |
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| T |
5302273 |
caaacccaaaattacaattttcaatacacaatgactcctcaagactcaaacaccctttatata |
5302335 |
T |
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