View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20230_low_12 (Length: 237)

Name: NF20230_low_12
Description: NF20230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20230_low_12
NF20230_low_12
[»] chr3 (2 HSPs)
chr3 (1-229)||(13219260-13219488)
chr3 (170-229)||(13217036-13217095)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-225)||(238221-238445)
scaffold0002 (158-225)||(240602-240669)
[»] chr2 (1 HSPs)
chr2 (1-68)||(10996334-10996401)
[»] chr4 (1 HSPs)
chr4 (134-229)||(18176963-18177058)
[»] chr5 (1 HSPs)
chr5 (170-229)||(39047942-39048001)
[»] chr7 (1 HSPs)
chr7 (138-226)||(14541323-14541411)
[»] scaffold0380 (1 HSPs)
scaffold0380 (170-229)||(15664-15723)
[»] chr1 (1 HSPs)
chr1 (184-229)||(39386263-39386308)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 13219488 - 13219260
Alignment:
Q  1 ttgagctaccaaagaagtaatgacccctaatgaggctagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13219488 ttgagctaccaaagaagtaatgacccctaatgaggctagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtcca 13219389  T
Q  101 cgccccaatctaccccccggaggaatatgtgcttctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaa 200  Q
    || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13219388 cggcccaatctaccccccggaggaatatgtgcttctaaaatatcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaa 13219289  T
Q  201 aaagaattgcaatagctaaatgatgatgt 229  Q
    |||||||||||||||||||||||||||||    
T  13219288 aaagaattgcaatagctaaatgatgatgt 13219260  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 13217095 - 13217036
Alignment:
Q  170 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 229  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13217095 ttagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgt 13217036  T

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Target: scaffold0002 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 238221 - 238445
Alignment:
Q  1 ttgagctaccaaagaagtaatgacccctaatgaggctagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtcca 100  Q
    ||||||||| || |||||||| |||||||| || ||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| |||||||| |||    
T  238221 ttgagctactaaggaagtaataacccctaaagaagctagagcaagacctaactgaaaatgaatcgaattgttgattgtgtcataaaggcccttatgccca 238320  T
Q  101 cgccccaatctaccccccggaggaatatgtgcttctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaa 200  Q
    ||||| |||| ||||||||||||| |||| ||||||||||  ||||| |||||||||||||| ||||||||||||| |||||| ||||| ||||||||||    
T  238321 cgccctaatcgaccccccggaggagtatgcgcttctaaaagatctttaatactgtgcccaattccgaagttagttcgatacatgtgaccggcaatgagaa 238420  T
Q  201 aaagaattgcaatagctaaatgatg 225  Q
    ||| || ||||||||||||||||||    
T  238421 aaataaatgcaatagctaaatgatg 238445  T

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Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 240602 - 240669
Alignment:
Q  158 ccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatg 225  Q
    ||||||||  |||| || |||||||||||||| || || || |||||||| |||||||||||||||||    
T  240602 ccaataccccagttggtcctatacatatgacctgcgattaggaaaagaatagcaatagctaaatgatg 240669  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 10996401 - 10996334
Alignment:
Q  1 ttgagctaccaaagaagtaatgacccctaatgaggctagagcaaggcctaattgaaaatgaattgaat 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10996401 ttgagctaccaaagaagtaatgacccctaatgaggctagagcaaggcctaattgaaaatgaattgaat 10996334  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 134 - 229
Target Start/End: Original strand, 18176963 - 18177058
Alignment:
Q  134 tctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 229  Q
    |||||||| ||| ||||||  || ||||||||  | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18176963 tctaaaatatctcttataccatgaccaataccccaattagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgt 18177058  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 39048001 - 39047942
Alignment:
Q  170 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 229  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  39048001 ttagttctatacatatgaccggtaatgagaaaaagaattgcaatagctaaatgatgatgt 39047942  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 14541323 - 14541411
Alignment:
Q  138 aaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatga 226  Q
    |||| ||||||||||  || |||||| |  |||||||| |||||||||||||  ||||||||||||||||||||||||| |||||||||    
T  14541323 aaatatcttttataccatgaccaatatcccagttagttttatacatatgaccgacaatgagaaaaagaattgcaatagcaaaatgatga 14541411  T

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Target: scaffold0380 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 15723 - 15664
Alignment:
Q  170 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 229  Q
    |||||||||||||||||||  |||||| ||||||||||||||||||||| ||||||||||    
T  15723 ttagttctatacatatgactggcaatgtgaaaaagaattgcaatagctagatgatgatgt 15664  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 39386308 - 39386263
Alignment:
Q  184 atgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 229  Q
    |||||| |||||| ||||||||||| ||||||||||||||||||||    
T  39386308 atgaccggcaatgcgaaaaagaattacaatagctaaatgatgatgt 39386263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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