View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20230_low_13 (Length: 231)

Name: NF20230_low_13
Description: NF20230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20230_low_13
NF20230_low_13
[»] chr6 (45 HSPs)
chr6 (18-216)||(28787821-28788019)
chr6 (18-216)||(28793942-28794140)
chr6 (17-216)||(27591431-27591630)
chr6 (17-216)||(27676030-27676229)
chr6 (26-213)||(27680538-27680725)
chr6 (26-216)||(26804034-26804224)
chr6 (26-188)||(26648046-26648208)
chr6 (26-188)||(26754014-26754176)
chr6 (18-188)||(31286124-31286294)
chr6 (18-197)||(26624830-26625009)
chr6 (18-197)||(26730807-26730986)
chr6 (18-216)||(27603110-27603309)
chr6 (18-213)||(27716918-27717113)
chr6 (18-213)||(27609539-27609734)
chr6 (18-216)||(27704679-27704877)
chr6 (18-213)||(27697008-27697203)
chr6 (18-148)||(26813117-26813247)
chr6 (18-188)||(26863139-26863309)
chr6 (18-165)||(27529774-27529921)
chr6 (18-153)||(25491786-25491921)
chr6 (30-168)||(27663671-27663805)
chr6 (18-169)||(26850292-26850439)
chr6 (18-168)||(27216017-27216167)
chr6 (18-119)||(26657542-26657643)
chr6 (18-119)||(26763513-26763614)
chr6 (26-119)||(26885658-26885751)
chr6 (26-168)||(26825401-26825543)
chr6 (18-119)||(26637208-26637309)
chr6 (18-119)||(26743174-26743275)
chr6 (18-143)||(29827557-29827682)
chr6 (18-119)||(2186385-2186486)
chr6 (18-130)||(26978948-26979060)
chr6 (18-170)||(26951311-26951459)
chr6 (18-169)||(27426078-27426229)
chr6 (18-120)||(25546548-25546650)
chr6 (18-120)||(25581287-25581389)
chr6 (18-120)||(26057487-26057589)
chr6 (18-120)||(26077457-26077559)
chr6 (26-119)||(25075455-25075548)
chr6 (18-120)||(25484624-25484726)
chr6 (18-120)||(26144433-26144535)
chr6 (18-127)||(26960693-26960802)
chr6 (49-139)||(29673508-29673598)
chr6 (18-127)||(28096954-28097063)
chr6 (18-127)||(28141106-28141215)
[»] chr1 (4 HSPs)
chr1 (19-216)||(266765-266962)
chr1 (18-139)||(26137450-26137571)
chr1 (19-136)||(5921971-5922088)
chr1 (18-168)||(28126152-28126298)
[»] scaffold1870 (1 HSPs)
scaffold1870 (21-216)||(352-547)
[»] scaffold0419 (1 HSPs)
scaffold0419 (21-216)||(9070-9265)
[»] scaffold0277 (2 HSPs)
scaffold0277 (26-216)||(3119-3309)
scaffold0277 (26-216)||(12082-12272)
[»] scaffold0349 (1 HSPs)
scaffold0349 (18-188)||(1983-2153)
[»] chr8 (3 HSPs)
chr8 (18-204)||(29272266-29272452)
chr8 (18-143)||(35984867-35984992)
chr8 (27-93)||(16371673-16371739)
[»] chr2 (1 HSPs)
chr2 (18-119)||(17991713-17991814)
[»] scaffold0003 (1 HSPs)
scaffold0003 (18-169)||(61134-61285)
[»] chr4 (3 HSPs)
chr4 (18-169)||(18075326-18075477)
chr4 (29-129)||(18653985-18654085)
chr4 (29-129)||(18678065-18678165)
[»] chr5 (1 HSPs)
chr5 (26-127)||(16692437-16692538)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 7e-73; HSPs: 45)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 28787821 - 28788019
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    |||||||  ||||||||||||||||| |||||||||||||| |||||||| ||||||||  |||||||||||||||||||||| ||||||||| ||||||    
T  28787821 ttgatagaagacatgggtaaagaagtcgtccgacaagaatcgcctaaagagcctggagaaagaagtaggttatggtgtcaagatgatatagttaatgttt 28787920  T
Q  118 taaaagaaaacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaactttgctttttgtggactaaataggaccatctcat 216  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||| ||| ||||||||||| |||||||||||    
T  28787921 taaaagaaaacaccgtgagtatgattgatatttatgttcaatttgttatttaattttgatacgactttgctctttttggactaaatatgaccatctcat 28788019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 28793942 - 28794140
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    |||||||  ||||||||||||||||| |||||||||||||| |||||||| ||||||||  |||||||||||||||||||||| ||||||||| ||||||    
T  28793942 ttgatagaagacatgggtaaagaagtcgtccgacaagaatcgcctaaagagcctggagaaagaagtaggttatggtgtcaagatgatatagttaatgttt 28794041  T
Q  118 taaaagaaaacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaactttgctttttgtggactaaataggaccatctcat 216  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||| ||| ||||||||||| |||||||||||    
T  28794042 taaaagaaaacaccgtgagtatgattgatatttatgttcaatttgttatttaattttgatacgactttgctctttttggactaaatatgaccatctcat 28794140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 27591630 - 27591431
Alignment:
Q  17 attgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgtt 116  Q
    |||||||| || ||||||||||||||| ||||||||||||||||||||||| ||||||||  |||| |||||||||| |||||| |||||||||||||||    
T  27591630 attgatagaggtcatgggtaaagaagtcgtccgacaagaatcacctaaagagcctggagaaagaagcaggttatggtctcaagatgatatagttcatgtt 27591531  T
Q  117 ttaaaagaaaacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaactttgctttttgtggactaaataggaccatctcat 216  Q
    |||||||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||  || ||||||||||| |||||||||||    
T  27591530 ttaaaagaaaacactgtgcgtaagattgatatctatgttcaatttgttatttagttttaatacaactttgctcattttggactaaatatgaccatctcat 27591431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 27676229 - 27676030
Alignment:
Q  17 attgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgtt 116  Q
    |||||||| || ||||||||||||||| ||||||||||||||||||||||| ||||||||  |||| |||||||||| |||||| |||||||||||||||    
T  27676229 attgatagaggtcatgggtaaagaagtggtccgacaagaatcacctaaagagcctggagaaagaagcaggttatggtctcaagatgatatagttcatgtt 27676130  T
Q  117 ttaaaagaaaacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaactttgctttttgtggactaaataggaccatctcat 216  Q
    |||| ||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||  || ||||||||||| |||||||||||    
T  27676129 ttaacagaaaacactgtgagtaagattgatatctatgttcaatttgttatttagttttaatacaattttgctcattttggactaaatatgaccatctcat 27676030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 26 - 213
Target Start/End: Original strand, 27680538 - 27680725
Alignment:
Q  26 ggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttttaaaagaa 125  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||    
T  27680538 ggacatgggtaaagaagtcgtccgacaagaatcacctaaagagcctggagaacgaagtaggttatggcgtcaagaagatataattcatgttttaaaagaa 27680637  T
Q  126 aacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaactttgctttttgtggactaaataggaccatct 213  Q
    ||||| ||||||| ||||||||| |||| ||| ||||||||||| ||||||||| |||||||| ||| || |||||||| || |||||    
T  27680638 aacactgtgagtatgattgatatctatgatcattttgttatttagttttaatacgactttgctctttttgcactaaatatgatcatct 27680725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 26804034 - 26804224
Alignment:
Q  26 ggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttttaaaagaa 125  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||| | | ||||||||||||||| |||| |||||||||||||||||| ||||||||    
T  26804034 ggacatgggtaaagaagtcgtccgacaagaatcacctaaagatcctgaaaaacgaagtaggttatggcgtcatgaagatatagttcatgttataaaagaa 26804133  T
Q  126 aacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaactttgctttttgtggactaaataggaccatctcat 216  Q
    ||||  |||||||||||||||||||||||||||||||||||||| |||  |||| ||||||| ||||  |||||| ||| |||||||||||    
T  26804134 aacattgtgagtaagattgatatttatgttcaatttgttatttagtttagatacgactttgcatttttaggactacatatgaccatctcat 26804224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 26 - 188
Target Start/End: Original strand, 26648046 - 26648208
Alignment:
Q  26 ggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttttaaaagaa 125  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||| | ||||||||||||||||||||| || |||||||||||||||||||||    
T  26648046 ggacatgggtaaggaagtagtccgacaagaatcacgtaaagagcctggagaacaaagtaggttatggtgtcaagatgaaatagttcatgttttaaaagaa 26648145  T
Q  126 aacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaactttgct 188  Q
    ||||| |||||||||||| |||| |||| ||||||||||||||| ||||||||| ||||||||    
T  26648146 aacactgtgagtaagattaatatctatgatcaatttgttatttagttttaatacgactttgct 26648208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 26 - 188
Target Start/End: Original strand, 26754014 - 26754176
Alignment:
Q  26 ggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttttaaaagaa 125  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||| | ||||||||||||||||||||| || |||||||||||||||||||||    
T  26754014 ggacatgggtaaggaagtagtccgacaagaatcacgtaaagagcctggagaacaaagtaggttatggtgtcaagatgaaatagttcatgttttaaaagaa 26754113  T
Q  126 aacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaactttgct 188  Q
    ||||| |||||||||||| |||| |||| ||||||||||||||| ||||||||| ||||||||    
T  26754114 aacactgtgagtaagattaatatctatgatcaatttgttatttagttttaatacgactttgct 26754176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 31286124 - 31286294
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||| || |||||  |||||||| ||||||||||||| ||||||||||||| ||    
T  31286124 ttgatagaggacatgggtaaagaagtcgtccgacaagaatcacctaaagagccaggagaaagaagtaggctatggtgtcaagatgatatagttcatgctt 31286223  T
Q  118 taaaagaaaacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaactttgct 188  Q
    |||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||| || ||||||||    
T  31286224 taaatgaaaacactgtgagtaagattgatatctatgttcaatttgttatttagttttaaaacgactttgct 31286294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 26624830 - 26625009
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| |||||||||||||| | | ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| |||||| |||||||||    
T  26624830 ttgatagaggacatgggtaaagcaatcgtccgacaagaatcacctaaagagcctggagaacgaagtagattatggtgtcaagatgatatatttcatgttt 26624929  T
Q  118 taaaagaaaacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaactttgctttttgtgga 197  Q
    ||||||||||||  ||||||||||||||||| |||| ||||||| ||||||| ||||||||| |||||||| ||| ||||    
T  26624930 taaaagaaaacagtgtgagtaagattgatatctatgatcaatttattatttagttttaatactactttgctctttttgga 26625009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 26730807 - 26730986
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| |||||||||||||| | | ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| |||||| |||||||||    
T  26730807 ttgatagaggacatgggtaaagcaatcgtccgacaagaatcacctaaagagcctggagaacgaagtagattatggtgtcaagatgatatatttcatgttt 26730906  T
Q  118 taaaagaaaacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaactttgctttttgtgga 197  Q
    ||||||||||||  ||||||||||||||||| |||| ||||||| ||||||| ||||||||| |||||||| ||| ||||    
T  26730907 taaaagaaaacagtgtgagtaagattgatatctatgatcaatttattatttagttttaatactactttgctctttttgga 26730986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 27603309 - 27603110
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||||||||||||||||| |||||||||||||||     
T  27603309 ttgatagaggacatgggtaaagaagtcgtccgacaagaatcacctaaagagcctggagaaagaagtaggttatggtgtcaagacgatatagttcatgttc 27603210  T
Q  118 taaaagaaaacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaac-tttgctttttgtggactaaataggaccatctcat 216  Q
    ||| ||||||||| ||||||||||||||||| ||   ||||||||||||||| ||||||||  || |||| | ||| ||||||||||| || ||||||||    
T  27603209 taacagaaaacactgtgagtaagattgatatataatatcaatttgttatttagttttaatatgacttttggtctttttggactaaatatgatcatctcat 27603110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 27717113 - 27716918
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| |||||||||||||||||| |||||||||||||||  |||||| ||||||||  ||||||||||||| ||||| || |||||||||| |||||    
T  27717113 ttgatagaggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgtcaggatgatatagttcgtgttt 27717014  T
Q  118 taaaagaaaacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaactttgctttttgtggactaaataggaccatct 213  Q
    ||| ||||||||| ||||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||| ||| || |||||||| || |||||    
T  27717013 taagagaaaacactgtgagtaagattgatatctatgatcattttgttatttagttttaatacaactttgctctttttgaactaaatatgatcatct 27716918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 27609734 - 27609539
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| |||||||||||||||||| |||||||||||||||  |||||| ||||||||  ||||||||||||| ||||| || |||||||||| |||||    
T  27609734 ttgatagaggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgtcaggatgatatagttcgtgttt 27609635  T
Q  118 taaaagaaaacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaactttgctttttgtggactaaataggaccatct 213  Q
    ||| ||||||||| ||||||||||||||||| |||| ||| ||||||||||| ||||||||| |||||||| ||| || |||||||| || |||||    
T  27609634 taagagaaaacactgtgagtaagattgatatctatgatcattttgttatttagttttaatacgactttgctctttttgcactaaatatgatcatct 27609539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 27704877 - 27704679
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| ||| |||||||||||||| |||||||||||||||  |||||| ||||||||  ||||||||||||| || || || ||||||||| |||| |    
T  27704877 ttgatagaggatatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccatgatgatatagttaatgtct 27704778  T
Q  118 taaaagaaaacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaactttgctttttgtggactaaataggaccatctcat 216  Q
    ||||||||||||| ||||||||||||||||| |||| ||| ||||||||||| ||||||||  |||||||| ||| ||||||||||| |||||||||||    
T  27704777 taaaagaaaacactgtgagtaagattgatatctatgatcattttgttatttagttttaatatgactttgctctttttggactaaatatgaccatctcat 27704679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 27697203 - 27697008
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| |||||||||||||||||| ||||||||||||||| ||||||| ||||||||  ||||||||||||| ||||| || ||||||  ||  ||||    
T  27697203 ttgatagaggacatgggtaaagaagtcgtccgacaagaatcaactaaagagcctggagaaagaagtaggttatgctgtcaggatgatataactcgggttt 27697104  T
Q  118 taaaagaaaacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaactttgctttttgtggactaaataggaccatct 213  Q
    ||| ||||||||| ||||||||||||||||| |||| ||| ||||||||||| ||||||||| |||||||| | | || |||||||| || |||||    
T  27697103 taagagaaaacactgtgagtaagattgatatctatgatcattttgttatttagttttaatacgactttgctctatttgcactaaatatgatcatct 27697008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 26813117 - 26813247
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| | ||| |||||||||| | |||| ||||||||||||| |||| || ||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  26813117 ttgatagagcacacgggtaaagaaattgtccaacaagaatcacctgaagaaccaggagaacgaagtaggctatggtgtcaagatgatatagttcatgttt 26813216  T
Q  118 taaaagaaaacaccgtgagtaagattgatat 148  Q
    ||||||||||||  |||||||||||||||||    
T  26813217 taaaagaaaacattgtgagtaagattgatat 26813247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 26863139 - 26863309
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| ||||||||| |||||| | |||||||||||||| |||||||| || || || |||||||||||||||||||| || |||||| | || ||||    
T  26863139 ttgatagaggacatgggcaaagaaatcgtccgacaagaatctcctaaagagccgggtgaacgaagtaggttatggtgtcatgatgatataatccacgttt 26863238  T
Q  118 taaaagaaaacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaactttgct 188  Q
    || |||||||||| ||||||||||||||||||||||  |||| |||||||    ||||| |||||||||||    
T  26863239 tagaagaaaacactgtgagtaagattgatatttatgaacaatctgttattagtctttaacacaactttgct 26863309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 27529921 - 27529774
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| |||||||||||||||||| |||||||||||||||||  | || |||||||| || |||||||| |||| | |    ||||||||||||||||    
T  27529921 ttgatagaggacatgggtaaagaagtcgtccgacaagaatcacccgatgagcctggagaacgcagtaggttgtggtttgagcgtgatatagttcatgttt 27529822  T
Q  118 taaaagaaaacaccgtgagtaagattgatatttatgttcaatttgtta 165  Q
    ||||| ||||||| ||||||||||||||||| || |  ||||||||||    
T  27529821 taaaaaaaaacactgtgagtaagattgatatctaggaacaatttgtta 27529774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 25491921 - 25491786
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| | |||||||||||||||| || ||||||||||||| ||| || |||||||| || |||||||| |||||||  || ||||| ||||| ||||    
T  25491921 ttgatagagcacatgggtaaagaagtcgttcgacaagaatcacgtaatgatcctggagaacgtagtaggttgtggtgtcccgatgatatggttcaagttt 25491822  T
Q  118 taaaagaaaacaccgtgagtaagattgatatttatg 153  Q
    ||| ||||||||| || |||||||||||||| ||||    
T  25491821 taagagaaaacacggtaagtaagattgatatctatg 25491786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 168
Target Start/End: Complemental strand, 27663805 - 27663671
Alignment:
Q  30 atgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttttaaaagaaaaca 129  Q
    ||||||| |||| |||||||||||||||||  |||||| ||||||||||| | |||||| ||| |||| || ||||||| ||||||||||||| ||||||    
T  27663805 atgggtatagaaatagtccgacaagaatcaattaaagagcctggagagcgcactaggttgtggcgtcatgatgatatagctcatgttttaaaacaaaaca 27663706  T
Q  130 ccgtgagtaagattgatatttatgttcaatttgttattt 168  Q
    |    |||||||||||||| ||||  |||||||||||||    
T  27663705 c----agtaagattgatatctatgaacaatttgttattt 27663671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 26850292 - 26850439
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| |||||||||||||||| | |||||||||||||||  |||||| ||||||  ||| |||||||| ||||||   || ||||| ||||||||||    
T  26850292 ttgatagaggacatgggtaaagaaatcgtccgacaagaatcaattaaagagcctggaaggcgcagtaggttgtggtgttgtgatgatattgttcatgttt 26850391  T
Q  118 taaaagaaaacaccgtgagtaagattgatatttatgttcaatttgttattta 169  Q
    || ||||||||||    |||||||||||| | ||||  ||||||||| ||||    
T  26850392 tacaagaaaacac----agtaagattgatttctatgaacaatttgtttttta 26850439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 27216017 - 27216167
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| ||| ||||||| |||||| |||||||||||||||||  |  | ||||| || || |||||||| |||| ||| || ||||||||||| |||     
T  27216017 ttgatagaggatatgggtagagaagttgtccgacaagaatcacccgacaatcctggggaacgcagtaggttgtggtttcacgatgatatagttcaagttc 27216116  T
Q  118 taaaagaaaacaccgtgagtaagattgatatttatgttcaatttgttattt 168  Q
    |||||||||| | ||||||||| | | |||||||||  |||||||||||||    
T  27216117 taaaagaaaatatcgtgagtaaaaataatatttatgaacaatttgttattt 27216167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 26657542 - 26657643
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| |||||||||||||||| | |||||||||||||||  |||||| || ||||| || |||||||||||||||||  | || |||||||||||||    
T  26657542 ttgatagaggacatgggtaaagaaatcgtccgacaagaatcaagtaaagagcccggagaacgtagtaggttatggtgtcacaatgacatagttcatgttt 26657641  T
Q  118 ta 119  Q
    ||    
T  26657642 ta 26657643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 26763513 - 26763614
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| |||||||||||||||| | |||||||||||||||  |||||| || ||||| || |||||||||||||||||  | || |||||||||||||    
T  26763513 ttgatagaggacatgggtaaagaaatcgtccgacaagaatcaagtaaagagcccggagaacgtagtaggttatggtgtcacaatgacatagttcatgttt 26763612  T
Q  118 ta 119  Q
    ||    
T  26763613 ta 26763614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 26885658 - 26885751
Alignment:
Q  26 ggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgtttta 119  Q
    |||||||||||||||| | || || |||||||||  |||||| |||||||| || ||||||||||||||||| || ||||||||||||||||||    
T  26885658 ggacatgggtaaagaaatcgttcggcaagaatcaagtaaagagcctggagaacgtagtaggttatggtgtcacgatgatatagttcatgtttta 26885751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 168
Target Start/End: Original strand, 26825401 - 26825543
Alignment:
Q  26 ggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttttaaaagaa 125  Q
    ||||||||| |||||||||||||||||| ||||| ||||||| || || || || || ||| | ||||||||  | |||||  ||||||||||  | | |    
T  26825401 ggacatgggcaaagaagtagtccgacaacaatcatctaaagagcccggtgaacgcagcaggctgtggtgtcacaatgatattattcatgttttgcaggga 26825500  T
Q  126 aacaccgtgagtaagattgatatttatgttcaatttgttattt 168  Q
    ||||| ||||||||||||||||||||||  |||||| ||||||    
T  26825501 aacacagtgagtaagattgatatttatgaacaattttttattt 26825543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 26637208 - 26637309
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| ||| ||||||| |||| | |||||||||||||||| |||  | |||||||| || |||||||| |||||||| || ||||||||||||||||    
T  26637208 ttgatagaggatatgggtatagaaatcgtccgacaagaatcacgtaataagcctggagaacgcagtaggttgtggtgtcatgacgatatagttcatgttt 26637307  T
Q  118 ta 119  Q
    ||    
T  26637308 ta 26637309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 26743174 - 26743275
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| ||| ||||||| |||| | |||||||||||||||| |||  | |||||||| || |||||||| |||||||| || ||||||||||||||||    
T  26743174 ttgatagaggatatgggtatagaaatcgtccgacaagaatcacgtaataagcctggagaacgcagtaggttgtggtgtcatgacgatatagttcatgttt 26743273  T
Q  118 ta 119  Q
    ||    
T  26743274 ta 26743275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 29827557 - 29827682
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    |||||||  ||||||||||||||| | || |||||||||||||| ||||| |||||| |||| |||||||| ||||   | |||||||||||||| || |    
T  29827557 ttgatagaagacatgggtaaagaaattgtacgacaagaatcaccgaaagagcctggaaagcgtagtaggttgtggttctatgaagatatagttcaagtct 29827656  T
Q  118 taaaagaaaacaccgtgagtaagatt 143  Q
    || |||||||  | ||||||||||||    
T  29827657 tagaagaaaattcggtgagtaagatt 29827682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 2186385 - 2186486
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| ||| |||||||||||| | || |||||||||||||| ||||| |||||| | || |||||||| ||||  || ||||||||||||| |||||    
T  2186385 ttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaagatatagttcctgttt 2186484  T
Q  118 ta 119  Q
    ||    
T  2186485 ta 2186486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 26978948 - 26979060
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| ||| ||||||| |||| | |||||||||||||||  |||||| |||||||| || |||||||| |||||||   |   ||||||||||||||    
T  26978948 ttgatagaggatatgggtatagaaatcgtccgacaagaatcaattaaagaacctggagaacgcagtaggttgtggtgtcgtaatagtatagttcatgttt 26979047  T
Q  118 taaaagaaaacac 130  Q
    || ||||||||||    
T  26979048 tacaagaaaacac 26979060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 26951311 - 26951459
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| ||| ||||||| |||| |  ||||||||||||||  || ||| |||||||| || |||||||| |||| ||  || ||||| ||||||||||    
T  26951311 ttgatagaggatatgggtatagaaatcatccgacaagaatcaattagagaacctggagaacgcagtaggttgtggtctcgtgatgatattgttcatgttt 26951410  T
Q  118 taaaagaaaacaccgtgagtaagattgatatttatgttcaatttgttatttaa 170  Q
    || ||||||||||    |||||||||||||| | ||  |||||| ||||||||    
T  26951411 tacaagaaaacac----agtaagattgatatctgtgaacaatttattatttaa 26951459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 27426229 - 27426078
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| | |||||||||||||| | ||||||| ||||||||||   || |||||| |  |||| |||||||||| | || | |||||| || | |||     
T  27426229 ttgatagagaacatgggtaaagaactcgtccgactagaatcaccttttgagcctggaaaaagaagcaggttatggtttgaaaaggatatatttgaagttc 27426130  T
Q  118 taaaagaaaacaccgtgagtaagattgatatttatgttcaatttgttattta 169  Q
    || |||||||||| |||||||||||||||||  | |  ||||||||||||||    
T  27426129 tagaagaaaacactgtgagtaagattgatatgcaggaacaatttgttattta 27426078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 25546548 - 25546650
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| |||||||||||||||||| |||||||||||||| || ||  | |||||||| || |||||||| |||| ||  || ||||||||| | ||||    
T  25546548 ttgatagaggacatgggtaaagaagtcgtccgacaagaatctcccaacaagcctggagaacgcagtaggttgtggtttcgcgatgatatagttaacgttt 25546647  T
Q  118 taa 120  Q
    |||    
T  25546648 taa 25546650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 25581287 - 25581389
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| |||||||||||||||| | |||||||||||||| || ||  |||||||||| || |||||||| |||| ||| || |||||| || | ||||    
T  25581287 ttgatagaggacatgggtaaagaaatcgtccgacaagaatctcccaagaaccctggagaacgcagtaggttgtggtttcacgatgatatatttgacgttt 25581386  T
Q  118 taa 120  Q
    |||    
T  25581387 taa 25581389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 26057487 - 26057589
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| |||||||||||||||||| |||||||||||||| || ||  | |||||||| || |||||||| |||| ||  || ||||||||| | ||||    
T  26057487 ttgatagaggacatgggtaaagaagtcgtccgacaagaatctcccaataagcctggagaacgcagtaggttgtggtttcgcgatgatatagttaacgttt 26057586  T
Q  118 taa 120  Q
    |||    
T  26057587 taa 26057589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 26077457 - 26077559
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| |||||||||||||||||| |||||||||||||| || ||  | |||||||| || |||||||| |||| ||  || ||||||||| | ||||    
T  26077457 ttgatagaggacatgggtaaagaagtcgtccgacaagaatctcccaagaagcctggagaacgcagtaggttgtggtttcgcgatgatatagttaacgttt 26077556  T
Q  118 taa 120  Q
    |||    
T  26077557 taa 26077559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 25075455 - 25075548
Alignment:
Q  26 ggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgtttta 119  Q
    |||||||||||||||| | |||||||| ||||||  |||||| |||||||| || |||||||| |||| ||| || |||||| || ||||||||    
T  25075455 ggacatgggtaaagaaatcgtccgacatgaatcaattaaagagcctggagaacgtagtaggttgtggtatcacgatgatatatttgatgtttta 25075548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 25484624 - 25484726
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| |||||||||||||||||| || ||||||||||| || ||  | |||||||| || |||||||| |||| ||| || |||||| || | ||||    
T  25484624 ttgatagaggacatgggtaaagaagtcgttcgacaagaatctcccaagaagcctggagaacgcagtaggttgtggtttcacgatgatatacttaacgttt 25484723  T
Q  118 taa 120  Q
    |||    
T  25484724 taa 25484726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 26144433 - 26144535
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| |||||||||||||||| | |||||||||||||| || ||  | |||||||| || |||||||| |||| ||  || ||||||||| | ||||    
T  26144433 ttgatagaggacatgggtaaagaaatcgtccgacaagaatctcccaacaagcctggagaacgcagtaggttgtggtttcccgatgatatagttaacgttt 26144532  T
Q  118 taa 120  Q
    |||    
T  26144533 taa 26144535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 26960693 - 26960802
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| ||| |||||||  ||| | || ||||| ||||||  |||||| |||||| | || |||||||| |||||||  || ||||||||||||||||    
T  26960693 ttgatagaggatatgggtatggaaattgttcgacaggaatcaattaaagagcctggaaaacgcagtaggttgtggtgtcgtgatgatatagttcatgttt 26960792  T
Q  118 taaaagaaaa 127  Q
    || |||||||    
T  26960793 tacaagaaaa 26960802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 139
Target Start/End: Complemental strand, 29673598 - 29673508
Alignment:
Q  49 gacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttttaaaagaaaacaccgtgagtaa 139  Q
    |||||||| ||||| |||| |||||| | || ||||||||||||| |   ||||||||| |||| |||||| ||||||| || ||||||||    
T  29673598 gacaagaagcacctgaagatcctggaaaacgtagtaggttatggttttccgaagatataattcaagttttagaagaaaatacagtgagtaa 29673508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 28097063 - 28096954
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    |||||||  ||||||||||||||| | ||  ||||||||||||| ||||| |||||| | || || ||||| | ||  || ||||||||| |||| ||||    
T  28097063 ttgatagaagacatgggtaaagaaattgtaagacaagaatcaccaaaagaacctggaaaacgtagcaggttgtcgttccatgaagatatatttcaagttt 28096964  T
Q  118 taaaagaaaa 127  Q
    || |||||||    
T  28096963 tagaagaaaa 28096954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 28141106 - 28141215
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| ||| |||||||||||| | || |||||||||||||| ||||| |||||  | || ||||| |||||||  ||  |||| ||||| || ||||    
T  28141106 ttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaagacatagtccaagttt 28141205  T
Q  118 taaaagaaaa 127  Q
    || |||||||    
T  28141206 tagaagaaaa 28141215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 266962 - 266765
Alignment:
Q  19 tgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgtttt 118  Q
    |||||| |||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  266962 tgatagaggacatgggtaaagaagtggtccgccaagaatcacctaaagagcctggagaacgaagtaggttatggtgtcaagatgatatagttcatgtttt 266863  T
Q  119 aaaagaaaacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaactttgctttttgtggactaaataggaccatctcat 216  Q
    |||  ||||||| |||||||||||||||||  ||| ||||||||||||||| ||||||||| |||||||| ||| ||||| ||||| |||||||||||    
T  266862 aaataaaaacactgtgagtaagattgatatcaatgatcaatttgttatttagttttaatacgactttgctctttttggacaaaatatgaccatctcat 266765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 26137450 - 26137571
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||| ||||| |||||| | || |||||||| |||| ||| |||||||||||||||||||    
T  26137450 ttgatagaggatatgggtaaagaaattgtccgacaagaatcacccaaagaacctggaaaacgcagtaggttgtggtttcatgaagatatagttcatgttt 26137549  T
Q  118 taaaagaaaacaccgtgagtaa 139  Q
    |||||||||| || ||||||||    
T  26137550 taaaagaaaatacagtgagtaa 26137571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 5922088 - 5921971
Alignment:
Q  19 tgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgtttt 118  Q
    |||||| ||||||||| |||||| | ||  ||||||||||||| ||||| |||||| |||| |||||||||||||| |  |||||||||||||| |||||    
T  5922088 tgatagaggacatgggaaaagaaattgttagacaagaatcaccgaaagagcctggaaagcgcagtaggttatggtgccctgaagatatagttcaagtttt 5921989  T
Q  119 aaaagaaaacaccgtgag 136  Q
    | ||||||| || |||||    
T  5921988 agaagaaaatacggtgag 5921971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 28126298 - 28126152
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| ||| | |||||||||| | |||||  ||||||||| |||||| |||||||| || |  ||||||||||||||  | |||||||||||||||     
T  28126298 ttgatagaggatacgggtaaagaaatcgtccggaaagaatcacgtaaagagcctggagaacgcaacaggttatggtgtcacaatgatatagttcatgttc 28126199  T
Q  118 taaaagaaaacaccgtgagtaagattgatatttatgttcaatttgttattt 168  Q
    || |  |||||||     ||||||||||||| ||||  |||||||||||||    
T  28126198 tacagaaaaacac----ggtaagattgatatctatgaacaatttgttattt 28126152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 21 - 216
Target Start/End: Original strand, 352 - 547
Alignment:
Q  21 ataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttttaa 120  Q
    |||| |||||||||||||||||| || ||||||||||| |||||||| || |||||  |||||||||||||||||||||| ||||||||| |||||||||    
T  352 atagaggacatgggtaaagaagtcgtacgacaagaatcgcctaaagagccaggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaa 451  T
Q  121 aagaaaacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaactttgctttttgtggactaaataggaccatctcat 216  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||| |||| |||  |||||||| ||| ||||||||||| |||||||||||    
T  452 aagaaaacactgtgagtaagattgatatctatgttcaatttgttatttagttttgatatgactttgctctttttggactaaatatgaccatctcat 547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 21 - 216
Target Start/End: Original strand, 9070 - 9265
Alignment:
Q  21 ataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttttaa 120  Q
    |||| |||||||||||||||||| || ||||||||||| |||||||| || |||||  |||||||||||||||||||||| ||||||||| |||||||||    
T  9070 atagaggacatgggtaaagaagtcgtacgacaagaatcgcctaaagagccaggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaa 9169  T
Q  121 aagaaaacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaactttgctttttgtggactaaataggaccatctcat 216  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||| |||| |||  |||||||| ||| ||||||||||| |||||||||||    
T  9170 aagaaaacactgtgagtaagattgatatctatgttcaatttgttatttagttttgatatgactttgctctttttggactaaatatgaccatctcat 9265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 26 - 216
Target Start/End: Complemental strand, 3309 - 3119
Alignment:
Q  26 ggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttttaaaagaa 125  Q
    |||||||||||||||||| |||||||||||||| || ||||| ||||||||  ||||||| ||||||||| |||| ||||||||| ||||||||||||||    
T  3309 ggacatgggtaaagaagtcgtccgacaagaatcgcccaaagagcctggagaaagaagtagattatggtgtgaagatgatatagttaatgttttaaaagaa 3210  T
Q  126 aacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaactttgctttttgtggactaaataggaccatctcat 216  Q
    ||||| ||||||||||||||||| |||||||||||||||||||| |||| |||  |||||||| ||| ||||||||||| |||||||||||    
T  3209 aacactgtgagtaagattgatatctatgttcaatttgttatttagttttgatatgactttgctctttttggactaaatatgaccatctcat 3119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 26 - 216
Target Start/End: Complemental strand, 12272 - 12082
Alignment:
Q  26 ggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttttaaaagaa 125  Q
    |||||||||||||||||| |||||||||||||| || ||||| ||||||||  ||||||| ||||||||| |||| ||||||||| ||||||||||||||    
T  12272 ggacatgggtaaagaagtcgtccgacaagaatcgcccaaagagcctggagaaagaagtagattatggtgtgaagatgatatagttaatgttttaaaagaa 12173  T
Q  126 aacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaactttgctttttgtggactaaataggaccatctcat 216  Q
    ||||| ||||||||||||||||| |||||||||||||||||||| |||| |||  |||||||| ||| ||||||||||| |||||||||||    
T  12172 aacactgtgagtaagattgatatctatgttcaatttgttatttagttttgatatgactttgctctttttggactaaatatgaccatctcat 12082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 2153 - 1983
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| |||||||||||||||||| |||||||||||||||  |||||| ||||||||  ||||||||||||| ||||| || |||||||||| |||||    
T  2153 ttgatagaggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgtcaggatgatatagttcgtgttt 2054  T
Q  118 taaaagaaaacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaactttgct 188  Q
    ||| ||||||||| ||||||||||||||||| |||| ||| ||||||||||| ||||||||||||||||||    
T  2053 taagagaaaacactgtgagtaagattgatatctatgatcattttgttatttagttttaatacaactttgct 1983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 29272452 - 29272266
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    |||||||||||||||||||||||||| |||||||||||||||  |||||| ||||||||  ||||||||||||| || || || ||| |||||| |||||    
T  29272452 ttgataggggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatctagttcgtgttt 29272353  T
Q  118 taaaagaaaacaccgtgagtaagattgatatttatgttcaatttgttatttaattttaatacaactttgctttttgtggactaaata 204  Q
    ||| ||||||||| ||||||||||||||||| |||| ||| ||||||||||| ||||||||| |||||||| ||| |||||||||||    
T  29272352 taagagaaaacactgtgagtaagattgatatctatgatcattttgttatttagttttaatacgactttgctctttttggactaaata 29272266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 35984867 - 35984992
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| |||||||||||| ||| | || ||||  ||||||||  |||| |||||| |||| ||| ||||||||| ||| ||||||||| |||| ||||    
T  35984867 ttgatagaggacatgggtaaggaaattgttcgactggaatcaccagaagaacctggaaagcgtagtcggttatggtctcatgaagatataattcaagttt 35984966  T
Q  118 taaaagaaaacaccgtgagtaagatt 143  Q
    || |||| || || ||||||| ||||    
T  35984967 tagaagagaatacagtgagtatgatt 35984992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 16371739 - 16371673
Alignment:
Q  27 gacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggt 93  Q
    ||||||||||||||| | ||||||||||||||||| || || || || || || |||||||||||||    
T  16371739 gacatgggtaaagaaattgtccgacaagaatcaccaaaggagccaggcgaacgtagtaggttatggt 16371673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 17991814 - 17991713
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| |||||||||||||||| | || || ||||||||||||||||| |||||||| || ||||| || |||||| |  | || |||||||||||||    
T  17991814 ttgatagaggacatgggtaaagaaatcgttcggcaagaatcacctaaagagcctggagaacggagtagattgtggtgttataatgacatagttcatgttt 17991715  T
Q  118 ta 119  Q
    ||    
T  17991714 ta 17991713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 61134 - 61285
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| | |||||||||||||| | ||||||| ||||||||||   || |||||| |  |||| |||||||||| | || | |||||| || | |||     
T  61134 ttgatagagaacatgggtaaagaactcgtccgactagaatcaccttttgagcctggaaaaagaagcaggttatggtttgaaaaggatatatttgaagttc 61233  T
Q  118 taaaagaaaacaccgtgagtaagattgatatttatgttcaatttgttattta 169  Q
    || |||||||||| |||||||||||||||||  | |  ||||||||||||||    
T  61234 tagaagaaaacactgtgagtaagattgatatgcaggaacaatttgttattta 61285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 18075326 - 18075477
Alignment:
Q  18 ttgataggggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttt 117  Q
    ||||||| | |||||||||||||| | ||||||| ||||||||||   || |||||| |  |||| |||||||||| | || | |||||| || | |||     
T  18075326 ttgatagagaacatgggtaaagaactcgtccgactagaatcaccttttgagcctggaaaaagaagcaggttatggtttgaaaaggatatatttgaagttc 18075425  T
Q  118 taaaagaaaacaccgtgagtaagattgatatttatgttcaatttgttattta 169  Q
    || |||||||||| |||||||||||||||||  | |  ||||||||||||||    
T  18075426 tagaagaaaacactgtgagtaagattgatatgcaggaacaatttgttattta 18075477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 18654085 - 18653985
Alignment:
Q  29 catgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttttaaaagaaaac 128  Q
    ||||||||||||| | |||||  |||||||||||||| | |||| | |||| |||||||| |||||||   | || ||||||||| ||||| | ||||||    
T  18654085 catgggtaaagaaatcgtccggaaagaatcacctaaacagcctgaaaagcgtagtaggttgtggtgtcgcaatgacatagttcatattttacaggaaaac 18653986  T
Q  129 a 129  Q
    |    
T  18653985 a 18653985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 18678165 - 18678065
Alignment:
Q  29 catgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttttaaaagaaaac 128  Q
    ||||||||||||| | |||||  |||||||||| ||||| |||| | |||| |||||||| |||||||   | || ||||||||| ||||| | ||||||    
T  18678165 catgggtaaagaaatcgtccggaaagaatcacccaaagagcctgaaaagcgtagtaggttgtggtgtcgcaatgacatagttcatattttacaggaaaac 18678066  T
Q  129 a 129  Q
    |    
T  18678065 a 18678065  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 16692437 - 16692538
Alignment:
Q  26 ggacatgggtaaagaagtagtccgacaagaatcacctaaagaccctggagagcgaagtaggttatggtgtcaagaagatatagttcatgttttaaaagaa 125  Q
    |||||||||||||||| | |||||| ||||||| || ||| | |||||  | || |||||||| |||| ||| |||||||||||||| |||||| |||||    
T  16692437 ggacatgggtaaagaaattgtccgaaaagaatccccaaaacatcctggtaaacgcagtaggttgtggtttcacgaagatatagttcaagttttagaagaa 16692536  T
Q  126 aa 127  Q
    ||    
T  16692537 aa 16692538  T

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