View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20230_low_2 (Length: 613)
Name: NF20230_low_2
Description: NF20230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20230_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 508; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 2 - 597
Target Start/End: Original strand, 12944898 - 12945493
Alignment:
| Q |
2 |
ttgaggaggagcagagacagcagagagtataaatttcttaacattttcaagcaaaacttgtgccttagaacgatcaaagatttccacagcatgataccca |
101 |
Q |
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|||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12944898 |
ttgaggagcaacagaaacagcagagagtataaatttcttaacattttcaagcaaaacttgtgccttagaacgatcaaagatttccacagcatgataccca |
12944997 |
T |
|
| Q |
102 |
tcctcatcaaaacaggactccacgtgcaccccgcgtgctgcaaaaatcttcgccagctccttttgcttatccaccaatggatcaccaccgtagccattta |
201 |
Q |
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|||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | |
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| T |
12944998 |
tcctcatcaaaacaggactccacgtgcaccccacgtgccgccaaaatcttcgccagctccttctgcttatccaccaatggatctccaccgtagccattaa |
12945097 |
T |
|
| Q |
202 |
caaaacaccttggcaaccgtcctatcttttcaccgtatacgtgatccaaagttgttggattgcaatactcgtggtccctgtctttgccctcaggcaaaca |
301 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12945098 |
caaagcaccttggcaaccgtccaatcttttcaccgtatacgtgatccaaagttgttggattgcaatactcgtggtccctgtctttgccctcgggcaaaca |
12945197 |
T |
|
| Q |
302 |
cagggaccacatgagatcacctgctggtaatggtaatatacgatcgttgaccaaacgaagctcagattccgttctttggaccccactaaaaaatggatat |
401 |
Q |
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||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12945198 |
taggaaccacatgaggtcacctgctggtaatggtaatatacgatcgttgaccaaacgaagctcagattccgttctctggaccccactaaaaaatggatat |
12945297 |
T |
|
| Q |
402 |
ttcattatgatccctcggattttaatgggagagagatcaacgtcaagagcacgtagacctgcgaaataggctatgttacctccggcactgtctcccatca |
501 |
Q |
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| T |
12945298 |
ttcattatgatccctcggattttaatgtgagagagatcaaggtcgagagcacgtagacctgcgaaataggctatgttacctccggcactgtctcccatca |
12945397 |
T |
|
| Q |
502 |
agaaacatttatcaaagtccacatggtctctgatccatggatcagattccgttggattttgagcttgggatttgagccagagaagagaatcaactg |
597 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12945398 |
agaagcatttatcaaagtccacgtggtctctgatccatggatcagattctgttggattttgagcttgggatttgagccagagaagagaatcaactg |
12945493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 30 - 582
Target Start/End: Original strand, 12937254 - 12937806
Alignment:
| Q |
30 |
ataaatttcttaacattttcaagcaaaacttgtgccttagaacgatcaaagatttccacagcatgatacccatcctcatcaaaacaggactccacgtgca |
129 |
Q |
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|||||||||||||| | ||||| || |||||||||||| | ||||||||| ||||||||||||| ||||||||||| |||| ||||||||||||| |
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| T |
12937254 |
ataaatttcttaacgtaatcaagtaatgcttgtgccttagcaggatcaaagagttccacagcatgaaacccatcctcacaaaaaacagactccacgtgca |
12937353 |
T |
|
| Q |
130 |
ccccgcgtgctgcaaaaatcttcgccagctccttttgcttatccaccaatggatcaccaccgtagccatttacaaaacaccttggcaaccgtcctatctt |
229 |
Q |
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| T |
12937354 |
ccccacgtgcctccaaaatcttcactagctccttttgcctatccaccaagggatccccaccgtagccgttaacaaagcacctcggcagccgtccgatctt |
12937453 |
T |
|
| Q |
230 |
ttcaccgtatacgtgatccaaagttgttggattgcaatactcgtggtccctgtctttgccctcaggcaaacacagggaccacatgagatcacctgctggt |
329 |
Q |
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||||| | || |||| || | ||||||| |||||| |||| |||| ||| | |||||||||||| | |||| |||||||||||||| ||||| | |
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| T |
12937454 |
ctcaccatgtatcacatccgaaacttttggattacaatacacgtgatcccgatctgtaccctcaggcaaagatagggcccacatgagatcacttgctgat |
12937553 |
T |
|
| Q |
330 |
aatggtaatatacgatcgttgaccaaacgaagctcagattccgttctttggaccccactaaaaaatggatatttcattatgatccctcggattttaatgg |
429 |
Q |
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|| |||| |||| |||||| | |||||||||||||||| ||||| || ||||||| |||||| ||| |||||||| | |||| |||| |||| | |
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| T |
12937554 |
aagggtagtatattatcgttaatgaaacgaagctcagattttgttctctgaaccccaccaaaaaacggagcattcattataagcccttggatcttaagag |
12937653 |
T |
|
| Q |
430 |
gagagagatcaacgtcaagagcacgtagacctgcgaaataggctatgttacctccggcactgtctcccatcaagaaacatttatcaaagtccacatggtc |
529 |
Q |
| |
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|||||||||| | |||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||| || |||||||||||||| | ||| |
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| T |
12937654 |
gagagagatcgaggtcaagagcacgtagacctgcgaagtacgctatgttacctcctgcactacttcccatcaagaagcagttatcaaagtccacgttgtc |
12937753 |
T |
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| Q |
530 |
tctgatccatggatcagattccgttggattttgagcttgggatttgagccaga |
582 |
Q |
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|||||||||||||||||| | |||||||||| ||||||| | ||||||||| |
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| T |
12937754 |
tctgatccatggatcagagacacttggattttgtgcttgggctctgagccaga |
12937806 |
T |
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