View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20230_low_3 (Length: 523)
Name: NF20230_low_3
Description: NF20230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20230_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 265
Target Start/End: Original strand, 14813362 - 14813611
Alignment:
| Q |
16 |
atgactggttgatcaaaacaagtgataatgtgtttcagagttggcgctgaattagtcaattcctatagaattcaaatataaaaaatcttaactatatctt |
115 |
Q |
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| T |
14813362 |
atgactggttgatcaaaacatgtgataatgtgtttcagagttggcgctgaattagtcaattcctctagaattcaaatataaaaaatcttaactatatctt |
14813461 |
T |
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| Q |
116 |
cttcttggcccacttgggacacgagatatgccattcaaaattaaacacagtagtacgtacgtaacgctgtgatactgtgacagttaaccacttttcttcc |
215 |
Q |
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| T |
14813462 |
cttcttggcccacttgggacacgagatatgccattcaaaattaaacacagtagtacgtacgtaacgctgtgatactgtgacagttaaccacttttcttcc |
14813561 |
T |
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| Q |
216 |
tcaattctgttccaattgcagcatctactatcaaacattacatacaatta |
265 |
Q |
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| T |
14813562 |
tcaattctgttccaattgcagcatctactatcaaacattacatacaatta |
14813611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 282 - 523
Target Start/End: Original strand, 14813594 - 14813835
Alignment:
| Q |
282 |
aaacattacatacaattattgtgataaacattgattaatacagtatatgattattataagataagatgctgatgggcacaataagtaatgactattgaat |
381 |
Q |
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| T |
14813594 |
aaacattacatacaattattgtgataaacattgattaatacagtatatgattattataagataagatgctgatgggcacaataagtaatgactattgaat |
14813693 |
T |
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| Q |
382 |
gtcttgatgaggcggtgtagtgtgaaaatttagtttgtttgtttcaaaacttcaaccagaaacataattaatacgaatgaactgtcccaatcgtcggtgg |
481 |
Q |
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| T |
14813694 |
gtcttgatgaggcggtgtagtgtgaaaatttagtttgtttgtttcacaacttcaaccagaaacataattaatacgaatgaactgtcccaatcgtcggtgg |
14813793 |
T |
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| Q |
482 |
atccactctctgcgacataaatgaaaatagcagcaacagtgg |
523 |
Q |
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| T |
14813794 |
atccactctcagcgacataaatgaaaatagcagcaacagtgg |
14813835 |
T |
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