View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20230_low_6 (Length: 353)
Name: NF20230_low_6
Description: NF20230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20230_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 291
Target Start/End: Original strand, 14813814 - 14814093
Alignment:
| Q |
15 |
atgaaaatagcagcaacagtggccagcaaattaaaggaagataaacttaactcatgttgagagcttctattcagatattcaaattttagctgtattatcc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14813814 |
atgaaaatagcagcaacagtggccagcaaattaaaggaagataaacttaactcatgttgagagcttctattcagatattcaaattttagctgtattatcc |
14813913 |
T |
|
| Q |
115 |
nnnnnnnnnnnnn---cttccaaaataatagtgtattctaaagttttcaaacaatgagttatcattgttgcagtgtgtagctctagtttggcaaagttgt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14813914 |
ttgtatttttttttttcttccaaaataatagtgtattctaaagttttcaaacaatgagttatcattgttgcagtgtgtagctctagtttggcaaagttgt |
14814013 |
T |
|
| Q |
212 |
gtatccttgtatattaagatacaaattgtatatgaattacttaattggcattgcactccattaagttttccaccattagt |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14814014 |
gtatccttgtatattaagatacaaattgtatatgaattacttaattggcattgcactccattaagttttccaccattagt |
14814093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University