View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20230_low_7 (Length: 322)
Name: NF20230_low_7
Description: NF20230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20230_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 532332 - 532041
Alignment:
| Q |
16 |
ataactacaattttaaatttaaataatctcttctttctacttagcttttctaaattttccttttcaca--gggtcaaaccaaggcctagaccggtgaaac |
113 |
Q |
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| T |
532332 |
ataactacaattttaaatttaaataatctcttctttctacttagcttttctaaattttccttttcacacagggtcaaaccaaggcctagaccggtgaaac |
532233 |
T |
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| Q |
114 |
aagggttttacgtacaaattttgtgtttgattatataatcgannnnnnnnnnctttctaagaaaatatatttatcaagcaataaagaagacaaaaccaat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
532232 |
aagggttttacgtacaaattttgtgtttgattatataatcgattttttttt-ctttttaagaaaatatatttatcaagcaataaagaagacaaaaccaat |
532134 |
T |
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| Q |
214 |
atgtagtgattgaaatgtttagtagtttgtctttaagacactttcactcgctctaaggtttaaattttcgtaatggaaatataatcgtatatg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
532133 |
atgtagtgattgaaatgtttagtagtttgtctttaagacactttcactcgctctaaggtttaaattttcgtaatggaaatataattgtatatg |
532041 |
T |
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