View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20230_low_8 (Length: 309)

Name: NF20230_low_8
Description: NF20230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20230_low_8
NF20230_low_8
[»] chr6 (4 HSPs)
chr6 (8-292)||(30230621-30230906)
chr6 (203-288)||(8839294-8839379)
chr6 (215-288)||(6002550-6002622)
chr6 (204-250)||(2900751-2900797)
[»] chr2 (7 HSPs)
chr2 (179-293)||(31615594-31615708)
chr2 (1-97)||(31616544-31616639)
chr2 (203-275)||(25410789-25410861)
chr2 (203-250)||(36204390-36204437)
chr2 (209-274)||(19323233-19323298)
chr2 (203-288)||(19378036-19378121)
chr2 (217-250)||(20262772-20262805)
[»] chr4 (6 HSPs)
chr4 (4-126)||(25940324-25940447)
chr4 (140-265)||(32495116-32495241)
chr4 (193-292)||(25940220-25940319)
chr4 (209-283)||(7620701-7620775)
chr4 (203-250)||(42586468-42586515)
chr4 (203-241)||(53095299-53095337)
[»] chr5 (2 HSPs)
chr5 (8-283)||(32718424-32718705)
chr5 (203-275)||(17197696-17197768)
[»] chr1 (2 HSPs)
chr1 (140-283)||(9885602-9885746)
chr1 (203-286)||(17895354-17895437)
[»] chr7 (2 HSPs)
chr7 (209-286)||(33440274-33440351)
chr7 (203-283)||(7488838-7488918)
[»] chr8 (1 HSPs)
chr8 (203-250)||(27286919-27286966)
[»] chr3 (2 HSPs)
chr3 (203-286)||(23687577-23687660)
chr3 (203-286)||(24059814-24059897)


Alignment Details
Target: chr6 (Bit Score: 146; Significance: 6e-77; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 8 - 292
Target Start/End: Complemental strand, 30230906 - 30230621
Alignment:
Q  8 gcaacccttgatctctgatttttc-gaatctgttgagatttgcagttgtcttgtgttggggccaaaggttcactggagtaggttgggttcgtggtcatca 106  Q
    ||||||||||||||||||||| || | |||||||||||||  ||||||||||||||||||||| |||||| | |||||||| ||||||||||||||||||    
T  30230906 gcaacccttgatctctgatttatccggatctgttgagattcccagttgtcttgtgttggggccgaaggttgattggagtagattgggttcgtggtcatca 30230807  T
Q  107 acgtctcagaagtcagcttggtcgtgtgactatattcagactgtatagccagaaatggcgtgaagaaatttctgtctctttaataataaatcgttcggga 206  Q
    |||||||  ||||||| ||||||||||||||| || |||||||||||||||||||| | |||||||| ||||||||||||| ||| ||||  ||| | ||    
T  30230806 acgtctccaaagtcagtttggtcgtgtgactacatgcagactgtatagccagaaattgtgtgaagaattttctgtctctttgatagtaaagggttggtga 30230707  T
Q  207 ggtgatgaatcttgaatggtttctgtgttggcagacgattcatatgtcagcttaagattcaccattcacattgtttgattggtttg 292  Q
    ||||||||||||||||||   ||||||||||||||| || ||||  |||||||||||||  |||||||| ||||||| ||||||||    
T  30230706 ggtgatgaatcttgaatgacatctgtgttggcagacaatacatacatcagcttaagatttgccattcactttgtttgtttggtttg 30230621  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 8839379 - 8839294
Alignment:
Q  203 gggaggtgatgaatcttgaatggtttctgtgttggcagacgattcatatgtcagcttaagattcaccattcacattgtttgattgg 288  Q
    ||||| ||||| ||||||||| |||||||||||| ||||||||||||| | |||  |||||  |||| ||||| ||||||||||||    
T  8839379 gggagttgatggatcttgaattgtttctgtgttgccagacgattcatacgccagactaagaaccaccgttcactttgtttgattgg 8839294  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 6002622 - 6002550
Alignment:
Q  215 atcttgaatggtttctgtgttggcagacgattcatatgtcagcttaagattcaccattcacattgtttgattgg 288  Q
    ||||||||| ||||||||||||| |||||||||||| | || |||||||  ||||| |||| ||||||||||||    
T  6002622 atcttgaattgtttctgtgttggtagacgattcatacgccaccttaaga-acaccactcactttgtttgattgg 6002550  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 2900797 - 2900751
Alignment:
Q  204 ggaggtgatgaatcttgaatggtttctgtgttggcagacgattcata 250  Q
    |||| ||||||||||||||| |||||| ||||| |||||||||||||    
T  2900797 ggagttgatgaatcttgaattgtttctatgttgacagacgattcata 2900751  T

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Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 179 - 293
Target Start/End: Complemental strand, 31615708 - 31615594
Alignment:
Q  179 tgtctctttaataataaatcgttcgggaggtgatgaatcttgaatggtttctgtgttggcagacgattcatatgtcagcttaagattcaccattcacatt 278  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||    
T  31615708 tgtctctttaatagtaaatcgttcgggaggtgatgaatcttgaatggtttctgtgttggcagacgattcatatgccaacttaagattcaccattcacttt 31615609  T
Q  279 gtttgattggtttgg 293  Q
    |||||||||||||||    
T  31615608 gtttgattggtttgg 31615594  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 31616639 - 31616544
Alignment:
Q  1 ttcgttcgcaacccttgatctctgatttttcgaatctgttgagatttgcagttgtcttgtgttggggccaaaggttcactggagtaggttgggttcg 97  Q
    |||||| ||||||||||||||||||||||  || |||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||    
T  31616639 ttcgtttgcaacccttgatctctgattttcaga-tctgttgagatttgtagttgtcttgtgttggggccgaaggttcgctggagtaggttgggttcg 31616544  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 25410861 - 25410789
Alignment:
Q  203 gggaggtgatgaatcttgaatggtttctgtgttggcagacgattcatatgtcagcttaagattcaccattcac 275  Q
    ||||| ||||| || |||||| |||||||||||||||||| ||||||| | |||| ||| |||||||||||||    
T  25410861 gggagttgatggattttgaattgtttctgtgttggcagacaattcatacgccagcctaaaattcaccattcac 25410789  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 36204437 - 36204390
Alignment:
Q  203 gggaggtgatgaatcttgaatggtttctgtgttggcagacgattcata 250  Q
    ||||| |||||||||||||||  |||| ||||||||||||||||||||    
T  36204437 gggagttgatgaatcttgaattatttcagtgttggcagacgattcata 36204390  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 19323298 - 19323233
Alignment:
Q  209 tgatgaatcttgaatggtttctgtgttggcagacgattcatatgtcagcttaagattcaccattca 274  Q
    ||||| |||||| || |||| |||||||||||| |||||||| |  || |||||||||||||||||    
T  19323298 tgatggatcttggatcgtttatgtgttggcagatgattcatacgctagtttaagattcaccattca 19323233  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 19378036 - 19378121
Alignment:
Q  203 gggaggtgatgaatcttgaatggtttctgtgttggcagacgattcatatgtcagcttaagattcaccattcacattgtttgattgg 288  Q
    ||||| ||||| ||||||||| |||| ||||||| ||||||||||||| | |||  |||||  | || ||||| ||||||||||||    
T  19378036 gggagttgatggatcttgaattgtttttgtgttgacagacgattcatacgccagactaagaaccgccgttcactttgtttgattgg 19378121  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 20262805 - 20262772
Alignment:
Q  217 cttgaatggtttctgtgttggcagacgattcata 250  Q
    ||||||| ||||||||||||||||||||||||||    
T  20262805 cttgaatcgtttctgtgttggcagacgattcata 20262772  T

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Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 4 - 126
Target Start/End: Complemental strand, 25940447 - 25940324
Alignment:
Q  4 gttcgcaacccttgatctctgatttttc-gaatctgttgagatttgcagttgtcttgtgttggggccaaaggttcactggagtaggttgggttcgtggtc 102  Q
    |||| |||||| ||||||||||||| || | ||||||||||||| ||||||||||||||||||||||||||||| | |||||||| ||||||||||||||    
T  25940447 gttcacaacccctgatctctgatttatccggatctgttgagattcgcagttgtcttgtgttggggccaaaggttgattggagtagattgggttcgtggtc 25940348  T
Q  103 atcaacgtctcagaagtcagcttg 126  Q
    |||||||||||  |||||||||||    
T  25940347 atcaacgtctccaaagtcagcttg 25940324  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 265
Target Start/End: Complemental strand, 32495241 - 32495116
Alignment:
Q  140 attcagactgtatagccagaaatggcgtgaagaaatttctgtctctt-taataataaatcgttcgggaggtgatgaatcttgaatggtttctgtgttggc 238  Q
    ||||||||||||| |||||||||||||||||||| ||  |||||||| | ||| ||||| ||| ||| | ||||| ||||||| ||||||||||||||||    
T  32495241 attcagactgtatggccagaaatggcgtgaagaatttcttgtctcttgtgatagtaaatggttgggg-gttgatggatcttgattggtttctgtgttggc 32495143  T
Q  239 agacgattcatatgtcagcttaagatt 265  Q
    ||||||||||||   ||||||||||||    
T  32495142 agacgattcatacaccagcttaagatt 32495116  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 292
Target Start/End: Complemental strand, 25940319 - 25940220
Alignment:
Q  193 taaatcgttcgggaggtgatgaatcttgaatggtttctgtgttggcagacgattcatatgtcagcttaagattcaccattcacattgtttgattggtttg 292  Q
    ||||| ||| ||||||||||||||||||||||   |||||||||||||||||||||||   |||||||||||||  ||||||| || |||| ||||||||    
T  25940319 taaatggttggggaggtgatgaatcttgaatgacatctgtgttggcagacgattcatacaccagcttaagattcgtcattcactttatttgtttggtttg 25940220  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 283
Target Start/End: Complemental strand, 7620775 - 7620701
Alignment:
Q  209 tgatgaatcttgaatggtttctgtgttggcagacgattcatatgtcagcttaagattcaccattcacattgtttg 283  Q
    ||||| ||||||||| |||| |||||||| |||||||||||| | || |||||||||  |||||||| |||||||    
T  7620775 tgatggatcttgaattgtttttgtgttggtagacgattcatacgccatcttaagatttgccattcactttgtttg 7620701  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 42586468 - 42586515
Alignment:
Q  203 gggaggtgatgaatcttgaatggtttctgtgttggcagacgattcata 250  Q
    ||||| ||||| ||||||||||| || |||||||||||||||||||||    
T  42586468 gggagttgatggatcttgaatggcttatgtgttggcagacgattcata 42586515  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 53095299 - 53095337
Alignment:
Q  203 gggaggtgatgaatcttgaatggtttctgtgttggcaga 241  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  53095299 gggagttgatgaatcttgaattgtttctgtgttggcaga 53095337  T

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Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 32718705 - 32718424
Alignment:
Q  8 gcaacccttgatctctgatttttcga-atctgttgagatttgcagttgtcttg-tgttggggccaaaggttcactggagtaggttgggttcgtggtcatc 105  Q
    |||||||||||||||| ||| ||| | |||||||||||||||||||| || || |||||| | | | |||| | ||||||||||| ||||||||||| ||    
T  32718705 gcaacccttgatctctaattcttccacatctgttgagatttgcagttatcctggtgttggtgtcgatggttgattggagtaggttaggttcgtggtcgtc 32718606  T
Q  106 aacgtctcagaagtcagcttggtcgtgtg--actatattcagactgtatagccagaaatggcgtgaagaaatttctgtctctt-taataataaatcgttc 202  Q
    | |||||   ||||| | ||| | |||||  |||  ||||||||||| | || ||||||||||||||||| ||| |||||||| | |||  |||| |||     
T  32718605 atcgtcttcaaagtcggtttgatagtgtgtgactgaattcagactgtttggctagaaatggcgtgaagaattttttgtctcttgtgataggaaatggttg 32718506  T
Q  203 ggg-aggtgatgaatcttgaatggtttctgtgttggcagacgattcatatgtcagcttaagattcaccattcacattgtttg 283  Q
    ||| || ||||| || ||||||||||||||| |||||||| |||||||| |||||| ||||||||  ||||||| |||||||    
T  32718505 ggggagttgatggatattgaatggtttctgtcttggcagaagattcatacgtcagcctaagattcgtcattcactttgtttg 32718424  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 17197768 - 17197696
Alignment:
Q  203 gggaggtgatgaatcttgaatggtttctgtgttggcagacgattcatatgtcagcttaagattcaccattcac 275  Q
    ||||| ||||| |||||| || |||||| ||||||||||||||||||| |||||||||||||||  |||||||    
T  17197768 gggagttgatggatcttggattgtttctatgttggcagacgattcatacgtcagcttaagattcgtcattcac 17197696  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 283
Target Start/End: Original strand, 9885602 - 9885746
Alignment:
Q  140 attcagactgtatagccagaaatggcgtgaagaaatttctgtctctt-taataataaatcgttcgggaggtgatgaatcttgaatggtttctgtgttggc 238  Q
    ||||||||||||| |||||||||||||||| ||| ||| |||||| | | ||| ||||| | | | ||| ||||| |||||||   | |||| |||||||    
T  9885602 attcagactgtatggccagaaatggcgtgacgaattttttgtctcatgtgatagtaaatagctggagagttgatggatcttgatcagattctctgttggc 9885701  T
Q  239 agacgattcatatgtcagcttaagattcaccattcacattgtttg 283  Q
    |||||||||||| |||| |||||||||| |||||||  |||||||    
T  9885702 agacgattcatacgtcaacttaagattcgccattcaatttgtttg 9885746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 17895354 - 17895437
Alignment:
Q  203 gggaggtgatgaatcttgaatggtttctgtgttggcagacgattcatatgtcagcttaagattcaccattcacattgtttgatt 286  Q
    ||||| ||||| ||||||||| |||| ||| |||| |||||||||||| | || |||||||||| |||||||| ||||||||||    
T  17895354 gggagttgatggatcttgaattgtttttgtcttggtagacgattcatacgccaacttaagattcgccattcactttgtttgatt 17895437  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 209 - 286
Target Start/End: Original strand, 33440274 - 33440351
Alignment:
Q  209 tgatgaatcttgaatggtttctgtgttggcagacgattcatatgtcagcttaagattcaccattcacattgtttgatt 286  Q
    ||||| ||||||| | |||||||||||||| ||||||||||| | ||||||||||||| |||||||| |||| |||||    
T  33440274 tgatggatcttgacttgtttctgtgttggcggacgattcatacgccagcttaagattctccattcactttgtgtgatt 33440351  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 283
Target Start/End: Original strand, 7488838 - 7488918
Alignment:
Q  203 gggaggtgatgaatcttgaatggtttctgtgttggcagacgattcatatgtcagcttaagattcaccattcacattgtttg 283  Q
    ||||| ||||| ||||||||| |||| |||| |||| |  |||||||| |  ||||||| ||||||||||||| |||||||    
T  7488838 gggagttgatggatcttgaattgtttatgtgctggccgttgattcatacgctagcttaatattcaccattcactttgtttg 7488918  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 27286919 - 27286966
Alignment:
Q  203 gggaggtgatgaatcttgaatggtttctgtgttggcagacgattcata 250  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  27286919 gggagttgatggatcttgaattgtttctgtgttggcagacgattcata 27286966  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 23687660 - 23687577
Alignment:
Q  203 gggaggtgatgaatcttgaatggtttctgtgttggcagacgattcatatgtcagcttaagattcaccattcacattgtttgatt 286  Q
    ||||| ||||| ||||||||| ||| ||||||| ||||| |||||||  | ||||||||||||   ||||||| ||||||||||    
T  23687660 gggagttgatggatcttgaattgttcctgtgttagcagatgattcattcgccagcttaagatttgtcattcactttgtttgatt 23687577  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 24059897 - 24059814
Alignment:
Q  203 gggaggtgatgaatcttgaatggtttctgtgttggcagacgattcatatgtcagcttaagattcaccattcacattgtttgatt 286  Q
    ||||| ||||| ||||||||| ||| ||||||| ||||| |||||||  | ||||||||||||   ||||||| ||||||||||    
T  24059897 gggagttgatggatcttgaattgttcctgtgttagcagatgattcattcgccagcttaagatttgtcattcactttgtttgatt 24059814  T

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