View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20230_low_9 (Length: 283)
Name: NF20230_low_9
Description: NF20230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20230_low_9 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 35 - 283
Target Start/End: Original strand, 43745855 - 43746103
Alignment:
| Q |
35 |
tcgattttgaattttgatagttggtagggataggggtataaatgttggcgtatagggtaaattttccccttggtcggtccgtggtagatggcccatatcc |
134 |
Q |
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| T |
43745855 |
tcgattttgaattttgatagttcgtagggataggggtataaatgttgacgtatagggtaaattttccccttggtcggtccgtggtagatggcccatatcc |
43745954 |
T |
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| Q |
135 |
atatagtggtaccttgtccttagtgttcgnnnnnnntttcgtttttgtcttgtcccttacccccatcccatccctcacatttgtcatgtctttaaaataa |
234 |
Q |
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| T |
43745955 |
atatagtgataacttgtccttagtgttcgaaaaaaaattcgtttttgtcttgtcccttacccccatcccatccctcacatttgtcatgtttttgaaataa |
43746054 |
T |
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| Q |
235 |
ttttacaatcaaacacagtacaactgaaattgtcatgtcccttattttt |
283 |
Q |
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| T |
43746055 |
ttttacaatcaaacacagtacagctgaaattgtcatgtcccttattttt |
43746103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 14011232 - 14011164
Alignment:
| Q |
214 |
tttgtcatgtctttaaaataattttacaatcaaacacagtacaactgaaattgtcatgtcccttatttt |
282 |
Q |
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| T |
14011232 |
tttgtcatgtccctaaaacaatttcacaatcaaacatagtacaactgaagttgtcctgtcctttatttt |
14011164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 38235425 - 38235475
Alignment:
| Q |
233 |
aattttacaatcaaacacagtacaactgaaattgtcatgtcccttattttt |
283 |
Q |
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| T |
38235425 |
aattttacaatcaaacataatgtaactgaaattgtcttgtcccttattttt |
38235475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 46100667 - 46100626
Alignment:
| Q |
233 |
aattttacaatcaaacacagtacaactgaaattgtcatgtcc |
274 |
Q |
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| T |
46100667 |
aattttacaatcaaacacactacaactaaatttgtcatgtcc |
46100626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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