View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20231_high_5 (Length: 245)
Name: NF20231_high_5
Description: NF20231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20231_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 6452519 - 6452763
Alignment:
| Q |
1 |
aaatctttgtacttaggatacatatatatattaacttaaataatgtaaataagcagatagacataattgaagtggttggttgcaaaacatataaaagaat |
100 |
Q |
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| T |
6452519 |
aaatctttgtacttaggatacatat--atattaacttaaataatgtaaataagaagatagacataattgaagtggttggttgcaaaacatataaaagaat |
6452616 |
T |
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| Q |
101 |
gatagtcatggtcaaagtaaata-------------------atgcattaaacattggtattggtatcccatatagctatagttaacaggagttaaccaa |
181 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6452617 |
gatagtcatggtcaaagtaaataatgcaactatagctatggtatgcattaaacattggtattggtatcccatatagctatagttaacaggagttaaccaa |
6452716 |
T |
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| Q |
182 |
tgaggtatgatgccacatatgcatnnnnnnnccaaatgtgaggtata |
228 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |
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| T |
6452717 |
tgaggtatgatgccacatatgcatgggggggccaaatgtgaggtata |
6452763 |
T |
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