View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20231_low_3 (Length: 364)
Name: NF20231_low_3
Description: NF20231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20231_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 7e-68; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 45331089 - 45331235
Alignment:
| Q |
4 |
aaaaataaagtatattc-atgtagtgtttttgttatagaataaaaagaagagaaattgaggttggcatgggaatgtaggaattgagtttggtttggctgg |
102 |
Q |
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| T |
45331089 |
aaaaataaagtatattcgatgtagtgtttttgttatagaataaaaagaagagaaattgagattggcatgggaatgtaggaattgagtttggtttggctgg |
45331188 |
T |
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| Q |
103 |
gtgaaccagtaaacccactgagttggatttgtgggaactgaattttg |
149 |
Q |
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| T |
45331189 |
gtgaaccagtaaacccactcagttggatttgtgggaactgaattttg |
45331235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 143 - 274
Target Start/End: Original strand, 45331253 - 45331384
Alignment:
| Q |
143 |
aattttgagggactagagtgtttgtttttagagtggtgaaaggatttgagaggaagatggtttggtttaagaaaaagataagatgaacatgatgaatttt |
242 |
Q |
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| T |
45331253 |
aattttgagggactagaatgtttgtttttagagtggtgaaaggatttaagaggaagatggtttggtttaagaaaaagataagatgaacatgatgaatttt |
45331352 |
T |
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| Q |
243 |
gttgggtttgtcgaagatggatagaagattgc |
274 |
Q |
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| T |
45331353 |
attgggtttgtcgaagatggatagaagattgc |
45331384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 45331422 - 45331460
Alignment:
| Q |
310 |
ttattttgttgttgtggaccaatctggttacgagtttaa |
348 |
Q |
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| T |
45331422 |
ttattttgttgttgtggaccaatctggttacgagtttaa |
45331460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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