View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20232_high_2 (Length: 331)
Name: NF20232_high_2
Description: NF20232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20232_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 35 - 310
Target Start/End: Original strand, 21205888 - 21206181
Alignment:
| Q |
35 |
caagttctatgtactatgaaacttaattatttgcaaaaaacacaattatgtcttattctaatcatttgacacctcatcgttttttactcatt--tgtctt |
132 |
Q |
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| T |
21205888 |
caagttctatgtactatgaaacttaattattcgcaaaaaacacaattatatcttattttaatcatttgacacctcatcgttttttactcatttgtgtctt |
21205987 |
T |
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| Q |
133 |
ttttatcnnnnnnnnccttttagatgagagagaaaataagtgtcgaaagattgaggtagttttgttgtaacaaaac-------------------tgtat |
213 |
Q |
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| T |
21205988 |
ttttatcaaaaaaaactttttagatgagagagaaaataagtgtccaaagattgaggtagtt---ttgtaacaaaacttccatttttatagagtagtgtat |
21206084 |
T |
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| Q |
214 |
ctggttttttgcagtttnnnnnnncagaatctacaatccagcccaaattaatattttttggtaatgcttgttatagcgaaaaattcaaccgcaaatg |
310 |
Q |
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| T |
21206085 |
ctggttttttgcagtttaaaaaaacagaatctacaatccagcccaaattaatattttttggtaatgcttgttatagcgaaaaattcaaccgcaaatg |
21206181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 27271389 - 27271542
Alignment:
| Q |
42 |
tatgtactatgaaacttaattatttgcaaaaaacacaattatgtcttattctaatcatttgacacctcatcgttttttactcatt--tgtcttttttatc |
139 |
Q |
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| T |
27271389 |
tatgtactatgaaacttaattattcgcaaaaaacataattatgtcttattctaatcatttgacacctcatcgttttttattcatttgtgtcttttttatc |
27271488 |
T |
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| Q |
140 |
nnnnnnnnccttttagatgagagagaaaataagtgtcgaaagattgaggtagtttt |
195 |
Q |
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| T |
27271489 |
--aaaaaaccttttagatgagagagaaaataagtgtcgaaagattgaggtagtttt |
27271542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 309
Target Start/End: Original strand, 27271954 - 27271993
Alignment:
| Q |
270 |
tttggtaatgcttgttatagcgaaaaattcaaccgcaaat |
309 |
Q |
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| T |
27271954 |
tttggtaatgcttgttatagcgaaaaattcaaccgcaaat |
27271993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 27271807 - 27271869
Alignment:
| Q |
209 |
tgtatctggttttttgcagtttnnnnnnncagaatctacaatccagcccaaattaatattttt |
271 |
Q |
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| T |
27271807 |
tgtatctgtttttttgcagtttaaaaaaacagaatctgcaatccagcccaaattaatattttt |
27271869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 23081732 - 23081772
Alignment:
| Q |
70 |
aaaaacacaattatgtcttattctaatcatttgacacctca |
110 |
Q |
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| T |
23081732 |
aaaaacacaattatgtcatattctaatcatttgacccctca |
23081772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 1951865 - 1951818
Alignment:
| Q |
150 |
ttttagatgagagagaaaataagtgtcgaaagattgaggtagttttgt |
197 |
Q |
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| T |
1951865 |
ttttaaatgagagagaaaataagtgttaaaagattgaggtagtcttgt |
1951818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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