View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20232_low_2 (Length: 471)

Name: NF20232_low_2
Description: NF20232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20232_low_2
NF20232_low_2
[»] chr1 (1 HSPs)
chr1 (14-456)||(39407093-39407535)
[»] chr5 (1 HSPs)
chr5 (291-456)||(20148207-20148378)
[»] chr2 (4 HSPs)
chr2 (134-282)||(12087425-12087573)
chr2 (347-456)||(12088078-12088187)
chr2 (338-457)||(12081235-12081345)
chr2 (63-185)||(12080501-12080622)
[»] scaffold0095 (4 HSPs)
scaffold0095 (301-456)||(13130-13284)
scaffold0095 (17-199)||(14253-14431)
scaffold0095 (224-278)||(24862-24916)
scaffold0095 (218-248)||(14195-14225)
[»] chr8 (7 HSPs)
chr8 (301-456)||(39456456-39456610)
chr8 (17-199)||(39455309-39455487)
chr8 (134-262)||(38814673-38814801)
chr8 (285-379)||(38815706-38815800)
chr8 (378-456)||(38815946-38816022)
chr8 (218-278)||(39463579-39463639)
chr8 (218-248)||(39455515-39455545)


Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 14 - 456
Target Start/End: Complemental strand, 39407535 - 39407093
Alignment:
Q  14 attattctggtttctaagcccttcttttatcttttctgcttttaattcatttaattcagttgttggcatgctgtaattctaactttatgattgtagatgt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39407535 attattctggtttctaagcccttcttttatcttttctgcttttaattcatttaattcggttgttggcatgctgtaattctaactttatgattgtagatgt 39407436  T
Q  114 tacaacacgtaataaatatccacataaaatcattgttctacctgaacagtattttagaatatctttgaaaatctctcgtccatattcaatgatgttannn 213  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  39407435 tacaacacggaataaatatccacataaaatcattgttctacctgaacagtattttagaatatctttgaaaatctctcgtccatattcaatgatgttattt 39407336  T
Q  214 nnnnaattatgattaggagttgatattagtacaaatactggttagtacttcgtctgagagcgagccttgatagcttagtgcatcttgagccttaggtgct 313  Q
        |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39407335 ttttaattatgattaggagttgatattagtacaaatactggttagtactttgtctgagagcgagccttgatagcttagtgcatcttgagccttaggtgct 39407236  T
Q  314 tcaaatgccgcttttggtagaatgtgatctatgatgctatttcaactttgaattgactaaatcttatgtggttaggaaatgacattatattgattattag 413  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39407235 tcaaatgccgcttttggtagaatgtgatctatgatgatatttcaactttgaattgactaaatcttatgtggttaggaaatgaaattatattgattattag 39407136  T
Q  414 aatactaactaaagtgttatagcattccatttggttggatact 456  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  39407135 aatactaactaaagtgttatagcattccatttggttggatact 39407093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 291 - 456
Target Start/End: Original strand, 20148207 - 20148378
Alignment:
Q  291 gtgcatcttgagccttaggtgcttcaaatgccgcttttggtagaatgtgatctatgatgctatttcaactttgaattgactaaatcttatgtggttagga 390  Q
    |||||||| ||||||||||||| || |||| | | | ||||| |||| |||||||||||||||||| ||||| |||| ||||||||||||||||||| ||    
T  20148207 gtgcatctagagccttaggtgcgtcgaatgtcccctgtggtataatgagatctatgatgctatttctactttcaattaactaaatcttatgtggttaaga 20148306  T
Q  391 aatgacattatattgatt------attagaatactaactaaagtgttatagcattccatttggttggatact 456  Q
    ||||| ||||||||||||      |||| |||||||||||||||||||||||||||| |||||| |||||||    
T  20148307 aatgatattatattgattattacaattacaatactaactaaagtgttatagcattccttttggtcggatact 20148378  T

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Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 134 - 282
Target Start/End: Original strand, 12087425 - 12087573
Alignment:
Q  134 cacataaaatcattgttctacctgaacagtattttagaatatctttgaaaatctctcgtccatattcaatgatgttannnnnnnaattatgattaggagt 233  Q
    ||||||||| |||| |||||||| ||||||| ||||||||||||| ||||||||||||||||||||| |||||||||       ||||||||||||| ||    
T  12087425 cacataaaaacattattctaccttaacagtaatttagaatatcttagaaaatctctcgtccatattccatgatgttatttgtttaattatgattaggggt 12087524  T
Q  234 tgatattagtacaaatactggttagtacttcgtctgagagcgagccttg 282  Q
    |||||||||||||||||||||||  | |||||||  |||||||||||||    
T  12087525 tgatattagtacaaatactggttgattcttcgtccaagagcgagccttg 12087573  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 347 - 456
Target Start/End: Original strand, 12088078 - 12088187
Alignment:
Q  347 atgctatttcaactttgaattgactaaatcttatgtggttaggaaatgacattatattgattattagaatactaactaaagtgttatagcattccatttg 446  Q
    |||||||||| ||||| |||||||||||  |||  |||||| ||||  |||||||||||||||||| ||||||| |||||||||| |||||||||||||     
T  12088078 atgctatttctactttcaattgactaaacattacatggttaagaaaaaacattatattgattattacaatactagctaaagtgttgtagcattccatttt 12088177  T
Q  447 gttggatact 456  Q
    ||||||||||    
T  12088178 gttggatact 12088187  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 338 - 457
Target Start/End: Original strand, 12081235 - 12081345
Alignment:
Q  338 tgatctatgatgctatttcaactttgaattgactaaatcttatgtggttaggaaatgacattatattgattattagaatactaactaaagtgttatagca 437  Q
    ||||||||||||||||||||||||| | |||||||||||||||||| ||| || |||||   | |||| ||||     |||||||| |||||||||||||    
T  12081235 tgatctatgatgctatttcaactttcagttgactaaatcttatgtgcttaagatatgac---acattg-ttat-----tactaactgaagtgttatagca 12081325  T
Q  438 ttccatttggttggatactg 457  Q
    || |||||||||||||||||    
T  12081326 ttgcatttggttggatactg 12081345  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 185
Target Start/End: Original strand, 12080501 - 12080622
Alignment:
Q  63 tttaattcagttgttggcatgctgtaattctaactttatgattgtagatgttacaacacgtaataaatatccacataaaatcattgttctacctgaacag 162  Q
    ||||||||| | |||| |||| ||| |||||||| | | ||| ||||||||||  | ||||||||||||| |||||||||||||| || ||  |  | ||    
T  12080501 tttaattcattagttgacatgttgttattctaacatcaggatggtagatgttatgatacgtaataaatat-cacataaaatcattattttattttgaaag 12080599  T
Q  163 tattttagaatatctttgaaaat 185  Q
    |||||||||||||||| ||||||    
T  12080600 tattttagaatatcttagaaaat 12080622  T

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Target: scaffold0095 (Bit Score: 76; Significance: 6e-35; HSPs: 4)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 301 - 456
Target Start/End: Complemental strand, 13284 - 13130
Alignment:
Q  301 agccttaggtgcttcaaatgccgcttttggtagaatgtgatctatgatgctatttcaactttgaattgactaaatcttatgtggttaggaaatgacatta 400  Q
    ||||||||||| | |||||| | ||| ||||| |||||||  || | ||||||||||||||| |||||||||||||||||||| ||| ||||||||||||    
T  13284 agccttaggtgttccaaatgtcccttgtggtaaaatgtgaa-tacggtgctatttcaactttcaattgactaaatcttatgtgattaagaaatgacatta 13186  T
Q  401 tattgattattagaatactaactaaagtgttatagcattccatttggttggatact 456  Q
    | |||||||||| | |||||| || |||||||||||||| ||||||||||||||||    
T  13185 tgttgattattacagtactaattagagtgttatagcattacatttggttggatact 13130  T

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Target: scaffold0095; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 14431 - 14253
Alignment:
Q  17 attctggtttctaagcccttcttttatcttttctgcttttaattcatttaattcagttgttggcatgctgtaattctaactttatgattgtagatgttac 116  Q
    |||||| |||||||||||  ||||||| | || |||||||| ||||||||||||| | ||||||||||||| |||||||| ||||||||||||   |||     
T  14431 attctgatttctaagcccagcttttatttgttttgcttttagttcatttaattcaatagttggcatgctgttattctaaccttatgattgtag---ttaa 14335  T
Q  117 aacacgtaataaatatccacataaaatcattgttctacctgaacagtattttagaatatctttgaaaatctctcgtccatatt 199  Q
    || || |||||| ||||  |||||||||||| ||||| |  ||||||||||||||||||||| ||| |||||| |||||||||    
T  14334 aatacataataagtatct-cataaaatcattattctatcctaacagtattttagaatatcttagaatatctcttgtccatatt 14253  T

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Target: scaffold0095; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 224 - 278
Target Start/End: Complemental strand, 24916 - 24862
Alignment:
Q  224 gattaggagttgatattagtacaaatactggttagtacttcgtctgagagcgagc 278  Q
    |||||||||| || |||||| ||||||||||||||||||| ||||||||||||||    
T  24916 gattaggagtcgacattagtgcaaatactggttagtactttgtctgagagcgagc 24862  T

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Target: scaffold0095; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 14225 - 14195
Alignment:
Q  218 aattatgattaggagttgatattagtacaaa 248  Q
    |||||||||||||||||||||||||||||||    
T  14225 aattatgattaggagttgatattagtacaaa 14195  T

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Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 301 - 456
Target Start/End: Original strand, 39456456 - 39456610
Alignment:
Q  301 agccttaggtgcttcaaatgccgcttttggtagaatgtgatctatgatgctatttcaactttgaattgactaaatcttatgtggttaggaaatgacatta 400  Q
    ||||||||||| | |||||| | ||| ||||| |||||||  || | ||||||||||||||| |||||||||||||||||||| ||| ||||||||||||    
T  39456456 agccttaggtgttccaaatgtcccttgtggtaaaatgtgaa-tacggtgctatttcaactttcaattgactaaatcttatgtgattaagaaatgacatta 39456554  T
Q  401 tattgattattagaatactaactaaagtgttatagcattccatttggttggatact 456  Q
    | |||||||||| | |||||| || |||||||||||||| ||||||||||||||||    
T  39456555 tgttgattattacagtactaattagagtgttatagcattacatttggttggatact 39456610  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 39455309 - 39455487
Alignment:
Q  17 attctggtttctaagcccttcttttatcttttctgcttttaattcatttaattcagttgttggcatgctgtaattctaactttatgattgtagatgttac 116  Q
    |||||| |||||||||||  ||||||| | || |||||||| ||||||||||||| | ||||||||||||| |||||||| ||||||||||||   |||     
T  39455309 attctgatttctaagcccagcttttatttgttttgcttttagttcatttaattcaatagttggcatgctgttattctaaccttatgattgtag---ttaa 39455405  T
Q  117 aacacgtaataaatatccacataaaatcattgttctacctgaacagtattttagaatatctttgaaaatctctcgtccatatt 199  Q
    || || |||||| ||||  |||||||||||| ||||| |  ||||||||||||||||||||| ||| |||||| |||||||||    
T  39455406 aatacataataagtatct-cataaaatcattattctatcctaacagtattttagaatatcttagaatatctcttgtccatatt 39455487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 134 - 262
Target Start/End: Original strand, 38814673 - 38814801
Alignment:
Q  134 cacataaaatcattgttctacctgaacagtattttagaatatctttgaaaatctctcgtccatattcaatgatgttannnnnnnaattatgattaggagt 233  Q
    |||||||||||||||||||| || |||||||||||||||| |||| | ||||||||| ||||||||| |||||||||        ||| |||||||||||    
T  38814673 cacataaaatcattgttctatctaaacagtattttagaatttcttaggaaatctctcttccatattccatgatgttatttgtttgattttgattaggagt 38814772  T
Q  234 tgatattagtacaaatactggttagtact 262  Q
    ||||||||||||||| | |||||||||||    
T  38814773 tgatattagtacaaaaattggttagtact 38814801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 285 - 379
Target Start/End: Original strand, 38815706 - 38815800
Alignment:
Q  285 agcttagtgcatcttgagccttaggtgcttcaaatgccgcttttggtagaatgtgatctatgatgctatttcaactttgaattgactaaatctta 379  Q
    ||||||||  ||||||| |||| ||||||||||||||| ||| |||||||||| |||||||||||||||||||||||| ||||| ||||||||||    
T  38815706 agcttagtatatcttgaccctttggtgcttcaaatgccccttgtggtagaatgcgatctatgatgctatttcaactttcaattggctaaatctta 38815800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 378 - 456
Target Start/End: Original strand, 38815946 - 38816022
Alignment:
Q  378 tatgtggttaggaaatgacattatattgattattagaatactaactaaagtgttatagcattccatttggttggatact 456  Q
    |||||||||| |||||||  ||||||||||||||  |||||||||||||||  ||||||||||||||||||||||||||    
T  38815946 tatgtggttaagaaatga--ttatattgattattgcaatactaactaaagttctatagcattccatttggttggatact 38816022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 39463579 - 39463639
Alignment:
Q  218 aattatgattaggagttgatattagtacaaatactggttagtacttcgtctgagagcgagc 278  Q
    ||||| |||||||||| || |||||| ||||||||||||||||||| ||||||||||||||    
T  39463579 aattaggattaggagtcgacattagtgcaaatactggttagtactttgtctgagagcgagc 39463639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 39455515 - 39455545
Alignment:
Q  218 aattatgattaggagttgatattagtacaaa 248  Q
    |||||||||||||||||||||||||||||||    
T  39455515 aattatgattaggagttgatattagtacaaa 39455545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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