View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20232_low_3 (Length: 403)
Name: NF20232_low_3
Description: NF20232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20232_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 7 - 369
Target Start/End: Complemental strand, 20362285 - 20361923
Alignment:
| Q |
7 |
ggagcagagataatggttcgcggatcaaattaaaaaagaaacgaaactctaaaggattcaagacatagatatgttcatatgaaacagtgagagatatcat |
106 |
Q |
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| T |
20362285 |
ggagcagacataatggttcgcggatcaaattaaaaaagaaacgaaactctaaaggattcaagacatagatatgttcatatgaaacagtgagagatatcat |
20362186 |
T |
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| Q |
107 |
cccaattacacagaaataccatggtacataaagtcataaacacccatcatatttatttaattaactacacctacaaacaagtctttccagcgcaaccaaa |
206 |
Q |
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| T |
20362185 |
cccaattacacagaaataccatggtacataaagtcataaacacccatcatatttatttaattaactacacctacaaacaagtctttccagcgcaaccaaa |
20362086 |
T |
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| Q |
207 |
acaagcatattcatggcaggtagattcctgcaaaaggaatacataatcaagggttaggggcataccggtgtgattacatataatgcagcagcagcaaagt |
306 |
Q |
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| T |
20362085 |
acaagcatatccatggcaggtagattcctgcaaaaggaatacataatcaagggttaggggcataccggtgtgattacatataatgcagcagcagcaaagt |
20361986 |
T |
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| Q |
307 |
atatgtacggtaaaatgaaaagatgggtatgttgttatgattactaaccataaccataaccat |
369 |
Q |
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| T |
20361985 |
atatgtacggtaaaatgaaaagatgggtatgttgttatgattactaaccataaccataaccat |
20361923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 218 - 363
Target Start/End: Complemental strand, 21549882 - 21549737
Alignment:
| Q |
218 |
catggcaggtagattcctgcaaaaggaatacataatcaagggttaggggcataccggtgtgattacatataatgcagcagcagcaaagtatatgtacggt |
317 |
Q |
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| T |
21549882 |
catggcaggtagattcctgcaaaaggaatgcataattaagggttaggggcataccgatgtgattaaatataatgcagcagcagcaacgtatatgtatggt |
21549783 |
T |
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| Q |
318 |
aaaatgaaaagatgggtatgttgttatgattactaaccataaccat |
363 |
Q |
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| T |
21549782 |
aaaatgaaaagatggatatgttgttatgattactaaccataaccat |
21549737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 21549974 - 21549882
Alignment:
| Q |
16 |
ataatggttcgcggatcaaattaaaaaagaaacgaaactctaaaggattcaagacatagatatgttcatatgaaacagtgagagatatcatcc |
108 |
Q |
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| T |
21549974 |
ataatggttcgcagatcaaattaagaaagaaatgaaactctaaaggattcaagacatagatatgttcatatgaaacagtgagagatatcatcc |
21549882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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