View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20232_low_5 (Length: 280)

Name: NF20232_low_5
Description: NF20232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20232_low_5
NF20232_low_5
[»] chr5 (14 HSPs)
chr5 (18-265)||(40776397-40776641)
chr5 (122-265)||(10344855-10344998)
chr5 (122-265)||(43584299-43584442)
chr5 (159-265)||(25362760-25362866)
chr5 (134-248)||(32158646-32158760)
chr5 (122-259)||(35765821-35765960)
chr5 (170-260)||(7317120-7317210)
chr5 (164-265)||(3024896-3024997)
chr5 (122-239)||(11977711-11977828)
chr5 (134-235)||(13974401-13974502)
chr5 (125-184)||(11970372-11970431)
chr5 (122-196)||(1309271-1309345)
chr5 (122-196)||(4631086-4631160)
chr5 (232-265)||(4630952-4630985)
[»] chr1 (27 HSPs)
chr1 (159-265)||(50249397-50249503)
chr1 (122-265)||(34032001-34032144)
chr1 (159-265)||(14373371-14373477)
chr1 (122-265)||(26352002-26352145)
chr1 (159-265)||(27721045-27721151)
chr1 (129-257)||(52023902-52024029)
chr1 (122-265)||(27721160-27721303)
chr1 (164-262)||(14593308-14593406)
chr1 (159-265)||(44257639-44257745)
chr1 (122-265)||(30293422-30293566)
chr1 (158-265)||(12484585-12484692)
chr1 (129-265)||(34047161-34047299)
chr1 (159-265)||(12591040-12591146)
chr1 (199-265)||(49402869-49402935)
chr1 (159-265)||(25487175-25487277)
chr1 (122-236)||(8894926-8895040)
chr1 (158-236)||(39125719-39125797)
chr1 (122-239)||(29568019-29568136)
chr1 (158-238)||(8565878-8565957)
chr1 (151-236)||(14607531-14607614)
chr1 (127-236)||(11799587-11799696)
chr1 (122-239)||(26594980-26595097)
chr1 (122-196)||(8989550-8989624)
chr1 (151-189)||(44938522-44938560)
chr1 (158-235)||(16757145-16757222)
chr1 (134-239)||(44556992-44557097)
chr1 (205-265)||(41857401-41857461)
[»] chr7 (23 HSPs)
chr7 (159-265)||(12983102-12983208)
chr7 (159-265)||(18292422-18292528)
chr7 (121-265)||(12977606-12977750)
chr7 (122-265)||(18270665-18270808)
chr7 (159-265)||(6747313-6747419)
chr7 (166-265)||(31883871-31883970)
chr7 (122-265)||(42285995-42286138)
chr7 (159-265)||(37502406-37502512)
chr7 (122-265)||(715784-715927)
chr7 (159-262)||(34274884-34274987)
chr7 (159-265)||(2297130-2297236)
chr7 (159-265)||(25440959-25441065)
chr7 (137-265)||(31929795-31929924)
chr7 (161-265)||(44567002-44567105)
chr7 (199-258)||(40927254-40927313)
chr7 (158-236)||(47187778-47187856)
chr7 (134-239)||(48843676-48843783)
chr7 (163-239)||(40339582-40339658)
chr7 (134-196)||(4268898-4268960)
chr7 (122-184)||(44057532-44057594)
chr7 (158-239)||(35778637-35778718)
chr7 (158-222)||(4268793-4268857)
chr7 (229-265)||(18528516-18528552)
[»] chr3 (16 HSPs)
chr3 (127-265)||(44064380-44064518)
chr3 (164-265)||(19115473-19115574)
chr3 (122-265)||(42886836-42886979)
chr3 (159-265)||(42571486-42571592)
chr3 (134-257)||(4759385-4759508)
chr3 (159-265)||(50038129-50038234)
chr3 (151-255)||(45460763-45460869)
chr3 (164-239)||(3985974-3986049)
chr3 (123-196)||(50646052-50646125)
chr3 (137-239)||(11337547-11337649)
chr3 (125-245)||(8817258-8817378)
chr3 (223-260)||(24357415-24357452)
chr3 (122-239)||(30315433-30315550)
chr3 (129-196)||(48901873-48901940)
chr3 (134-180)||(7230816-7230862)
chr3 (151-239)||(54403217-54403303)
[»] chr6 (10 HSPs)
chr6 (121-265)||(4850417-4850561)
chr6 (159-257)||(32429382-32429480)
chr6 (122-262)||(29400035-29400175)
chr6 (164-259)||(19689423-19689518)
chr6 (158-236)||(13597902-13597980)
chr6 (151-236)||(13503785-13503870)
chr6 (215-260)||(19689250-19689295)
chr6 (152-239)||(1502695-1502782)
chr6 (151-239)||(13011289-13011377)
chr6 (134-235)||(3988669-3988769)
[»] chr8 (12 HSPs)
chr8 (122-264)||(396137-396279)
chr8 (159-265)||(15160406-15160512)
chr8 (122-265)||(39765783-39765926)
chr8 (159-265)||(17655994-17656100)
chr8 (159-260)||(37559493-37559594)
chr8 (122-265)||(43724469-43724612)
chr8 (159-262)||(40362525-40362628)
chr8 (121-239)||(24245129-24245247)
chr8 (137-245)||(12339831-12339937)
chr8 (158-196)||(5295355-5295393)
chr8 (134-236)||(43969977-43970078)
chr8 (158-239)||(34796630-34796711)
[»] chr4 (20 HSPs)
chr4 (122-264)||(7905923-7906065)
chr4 (122-265)||(38510172-38510315)
chr4 (164-265)||(51733463-51733564)
chr4 (122-265)||(22220286-22220429)
chr4 (122-265)||(37624643-37624786)
chr4 (159-265)||(4505423-4505529)
chr4 (159-265)||(25231262-25231368)
chr4 (159-265)||(52915506-52915612)
chr4 (169-265)||(21864357-21864453)
chr4 (169-265)||(21920218-21920314)
chr4 (159-265)||(43337711-43337817)
chr4 (164-239)||(36558258-36558333)
chr4 (200-263)||(56555727-56555789)
chr4 (158-235)||(41496332-41496409)
chr4 (158-236)||(44868205-44868282)
chr4 (159-249)||(28308826-28308919)
chr4 (121-174)||(10573069-10573122)
chr4 (122-239)||(44061117-44061234)
chr4 (122-239)||(47817862-47817979)
chr4 (128-236)||(30779948-30780050)
[»] scaffold0332 (1 HSPs)
scaffold0332 (122-265)||(3733-3876)
[»] chr2 (18 HSPs)
chr2 (118-265)||(17695744-17695891)
chr2 (115-265)||(45423705-45423855)
chr2 (134-265)||(27986125-27986256)
chr2 (134-265)||(28072657-28072788)
chr2 (137-265)||(22620272-22620400)
chr2 (166-265)||(5717599-5717698)
chr2 (176-265)||(35799289-35799378)
chr2 (159-265)||(43427248-43427353)
chr2 (129-265)||(14286018-14286153)
chr2 (159-238)||(32022860-32022939)
chr2 (122-254)||(16792584-16792715)
chr2 (199-265)||(16463032-16463098)
chr2 (159-259)||(45301858-45301956)
chr2 (122-239)||(33056014-33056131)
chr2 (137-239)||(37038697-37038799)
chr2 (151-235)||(8540166-8540250)
chr2 (118-180)||(681675-681737)
chr2 (134-236)||(10195801-10195903)
[»] scaffold0010 (1 HSPs)
scaffold0010 (158-239)||(153430-153511)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 7e-89; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 40776397 - 40776641
Alignment:
Q  18 atgaatggtcaccaaaatatcagtctctagggatgggtccttactgaccccacaaatatagttcactggtcctcaattccatgtgatgtatggacacttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  40776397 atgaatggtcaccaaaatatcagtctctagggatgggtccttactgaccccacaaatatagttcactgatcctcaattccatgtgatgtatggagacttg 40776496  T
Q  118 aaagtactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaa 217  Q
    |||||||| || ||| || ||||| | |||  |||||||||||||||| |||||||| ||||   |||||||||| |||||||||| |||||||||||||    
T  40776497 aaagtactacacccgtttcaaaattaatgttgattaagagttttacacgcatattaaaaaat---atgattaaaaaaaaatgaatgattatttgaccaaa 40776593  T
Q  218 ttatccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    ||||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  40776594 ttatccttattaattattggttagttttaaaagtaatgctttggaagt 40776641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 122 - 265
Target Start/End: Original strand, 10344855 - 10344998
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    |||||| |||| || ||||||||||||  || ||   |||||||||||||||||||||| |||||||||||||||  |||||||||||| ||||||||||    
T  10344855 tactccctccgtttcaaaatgagtgtcgttttaggtctttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattat 10344954  T
Q  222 ccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    |||||||| |||||||||| ||||||||||||||||||||||||    
T  10344955 ccttattagctattggttagttttaaaagtaatactttggaagt 10344998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 122 - 265
Target Start/End: Original strand, 43584299 - 43584442
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    ||||||||||| |||||| | ||||||  || ||   |||||||||||||||||||||  |||||||||||||||  ||||| |||||| ||||||||||    
T  43584299 tactccatccgttttaaagtaagtgtcgttttaggtgtttacacacatattaagaaatacaatgattaaaagaaagagaatgattattttaccaaattat 43584398  T
Q  222 ccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  43584399 ccttattaactattggttaattttaaaagtaatattttggaagt 43584442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 25362760 - 25362866
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    |||||||||||||||||||||| |||||||||||||||  |||||||| ||| |||||| ||||||||||||||||||| || |||||||||||||||||    
T  25362760 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttgttttaccaaaatatccttattaactattggctagttttaaaagtaatactt 25362859  T
Q  259 tggaagt 265  Q
    |||||||    
T  25362860 tggaagt 25362866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 32158760 - 32158646
Alignment:
Q  134 tttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaacta 233  Q
    |||||||||||||||  || || | |||||||||||||||||||||| |||||||||||||||  |||||||||||| ||||||||||| ||||||||||    
T  32158760 tttaaaatgagtgtcgttttaggggtttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatctttattaacta 32158661  T
Q  234 ttggttaattttaaa 248  Q
    ||||||| |||||||    
T  32158660 ttggttagttttaaa 32158646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 122 - 259
Target Start/End: Original strand, 35765821 - 35765960
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaa--tgtaatgattaaaagaaaatgaatggttatttgaccaaatt 219  Q
    ||||||||||| || |||||| |||||  || ||   |||||||||||||||| |||  || |||||||||||||||  |||||||||||| ||||||||    
T  35765821 tactccatccgtttcaaaatgggtgtcgttttaggtgtttacacacatattaaaaaaaatgcaatgattaaaagaaagagaatggttattttaccaaatt 35765920  T
Q  220 atccttattaactattggttaattttaaaagtaatacttt 259  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  35765921 atccttattaactattggttagttttaaaagtaatacttt 35765960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 170 - 260
Target Start/End: Complemental strand, 7317210 - 7317120
Alignment:
Q  170 attaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactttg 260  Q
    ||||||||||| |||||||||||||||  |||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  7317210 attaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaactattgattagttttaaaagtaatactttg 7317120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 164 - 265
Target Start/End: Original strand, 3024896 - 3024997
Alignment:
Q  164 acacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactttggaa 263  Q
    ||||| ||||||||||| || ||||||||||||  |||||||||||| |||||||||||||| ||||||||| |||| ||||||||||||||||||||||    
T  3024896 acacacattaagaaatgcaacgattaaaagaaagagaatggttattttaccaaattatcctttttaactattagttagttttaaaagtaatactttggaa 3024995  T
Q  264 gt 265  Q
    ||    
T  3024996 gt 3024997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 11977828 - 11977711
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    ||||||||||| || ||||||||||||  |||||  ||||||||||||||||||||||| | | |||||||||||  ||   ||| ||| ||||||||||    
T  11977828 tactccatccgtttcaaaatgagtgtcgtttaagctttttacacacatattaagaaatgcattaattaaaagaaagagagatgttgttttaccaaattat 11977729  T
Q  222 ccttattaactattggtt 239  Q
    ||| || |||||||||||    
T  11977728 cctaatcaactattggtt 11977711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 13974502 - 13974401
Alignment:
Q  134 tttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaacta 233  Q
    |||||||||| ||||  |||||| ||||||||||||||||||||||| | | |||||||||||  ||   ||||||| ||||||||||||| || |||||    
T  13974502 tttaaaatgaatgtcgtttaagatttttacacacatattaagaaatgcattaattaaaagaaagagaggtgttattttaccaaattatcctaatcaacta 13974403  T
Q  234 tt 235  Q
    ||    
T  13974402 tt 13974401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 11970431 - 11970372
Alignment:
Q  125 tccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaat 184  Q
    |||||||| |||||||||||||||  |||||| ||||||||||| |||||||||||||||    
T  11970431 tccatccgttttaaaatgagtgtcatttaagatttttacacacaaattaagaaatgtaat 11970372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 1309271 - 1309345
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaa 196  Q
    ||||||||||| || ||||||| ||||  |||||  ||||||||||||||||||||||| | | |||||||||||    
T  1309271 tactccatccgtttcaaaatgaatgtcatttaaggtttttacacacatattaagaaatgcattaattaaaagaaa 1309345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 4631160 - 4631086
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaa 196  Q
    |||||| |||| || ||||||||||||  || ||   |||||||||||||||||||||  |||||||||||||||    
T  4631160 tactccctccgtttcaaaatgagtgtcgttttaggtgtttacacacatattaagaaatacaatgattaaaagaaa 4631086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 4630985 - 4630952
Alignment:
Q  232 tattggttaattttaaaagtaatactttggaagt 265  Q
    ||||||||| ||||||||||||||||||||||||    
T  4630985 tattggttagttttaaaagtaatactttggaagt 4630952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 50249503 - 50249397
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    |||||||||||||||||||||| |||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50249503 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaactattggttaattttaaaagtaatactt 50249404  T
Q  259 tggaagt 265  Q
    |||||||    
T  50249403 tggaagt 50249397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 122 - 265
Target Start/End: Original strand, 34032001 - 34032144
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    |||||| |||| |||||||||||||||  || ||   |||||| ||||||||| ||||| |||||||||||||||  |||||||||||| ||||||||||    
T  34032001 tactccttccgttttaaaatgagtgtcgttttaggtgtttacatacatattaaaaaatgcaatgattaaaagaaagagaatggttattttaccaaattat 34032100  T
Q  222 ccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  34032101 ccttattaactattggttagttttaaaagtaatactttggaagt 34032144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 14373371 - 14373477
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||    
T  14373371 tttacacacatattaagaaatgcaatgattaaaagaaaaagaatggttattttaccaaattatccttattaactattggttagttttaaaaataatactt 14373470  T
Q  259 tggaagt 265  Q
    || ||||    
T  14373471 tgaaagt 14373477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 122 - 265
Target Start/End: Original strand, 26352002 - 26352145
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    ||||||||||| |||||||||||||||  || ||   |||||||||||||||||||||| ||| |||||||||||  ||||| |||||| ||||||||||    
T  26352002 tactccatccgttttaaaatgagtgtcgttttaggtgtttacacacatattaagaaatgcaattattaaaagaaagagaatgtttattttaccaaattat 26352101  T
Q  222 ccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    ||||||| ||||||||||| ||||||||||||||||||| ||||    
T  26352102 ccttattgactattggttagttttaaaagtaatactttgaaagt 26352145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 27721151 - 27721045
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    |||||||||||||||| ||||| ||||||||||||||| |||||| |||||| | ||||||||||||||||||||||| ||| |||||||||||||||||    
T  27721151 tttacacacatattaaaaaatgcaatgattaaaagaaagtgaatgattattttatcaaattatccttattaactattgattagttttaaaagtaatactt 27721052  T
Q  259 tggaagt 265  Q
    |||||||    
T  27721051 tggaagt 27721045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 129 - 257
Target Start/End: Original strand, 52023902 - 52024029
Alignment:
Q  129 tccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttatt 228  Q
    |||| |||||||||||||| | ||| ||  |||||||||||||||||||||| |||||||||||||||  ||||| |||||| |||||||||||||||||    
T  52023902 tccgttttaaaatgagtgtgtttta-gatctttacacacatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatccttatt 52024000  T
Q  229 aactattggttaattttaaaagtaatact 257  Q
    | |||||||||| ||||||||||||||||    
T  52024001 agctattggttagttttaaaagtaatact 52024029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 122 - 265
Target Start/End: Complemental strand, 27721303 - 27721160
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    |||||| |||| |||||||||||||||  |  |||  ||||| |||||||||| ||||| ||| |||||||||||  ||||| |||||| | ||||||||    
T  27721303 tactccctccgttttaaaatgagtgtcgttgtagatgtttacgcacatattaaaaaatgcaataattaaaagaaagagaatgattattttatcaaattat 27721204  T
Q  222 ccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||    
T  27721203 ccttattaactattgattagttttaaaagtaatactttggaagt 27721160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 164 - 262
Target Start/End: Original strand, 14593308 - 14593406
Alignment:
Q  164 acacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactttgga 262  Q
    ||||||||||||||||| ||||||||||| |||   ||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  14593308 acacatattaagaaatgcaatgattaaaaaaaagataatggttattttaccaaattatccttattaactatttgttagttttaaaagtaatactttgga 14593406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 44257639 - 44257745
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    |||||||||||||||| ||||| |||||||||||||||  ||||  |||||| ||||||||||||||||||| ||||||||| |||||||||||||| ||    
T  44257639 tttacacacatattaataaatgcaatgattaaaagaaagagaataattattttaccaaattatccttattaattattggttagttttaaaagtaatattt 44257738  T
Q  259 tggaagt 265  Q
    |||||||    
T  44257739 tggaagt 44257745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 265
Target Start/End: Complemental strand, 30293566 - 30293422
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    ||||||||||| || |||| |||||||  || ||   |||||||| ||||||||||||| |||||||||||||||   ||||||||||| ||||||||||    
T  30293566 tactccatccgtttcaaaacgagtgtcgttttaggtgtttacacatatattaagaaatgcaatgattaaaagaaagataatggttattttaccaaattat 30293467  T
Q  222 ccttattaactattggttaattttaaaagtaa-tactttggaagt 265  Q
    ||||||||| ||||||||| |||| ||||||| ||||||||||||    
T  30293466 ccttattaattattggttagtttttaaagtaattactttggaagt 30293422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 158 - 265
Target Start/End: Original strand, 12484585 - 12484692
Alignment:
Q  158 ttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatact 257  Q
    ||||||||||||||||||||||  || ||||||||||||   ||| || |||| ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  12484585 ttttacacacatattaagaaatacaaagattaaaagaaagataattgtcattttaccaaattatccttattgactattggttagttttaaaagtaatact 12484684  T
Q  258 ttggaagt 265  Q
    ||||||||    
T  12484685 ttggaagt 12484692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 129 - 265
Target Start/End: Original strand, 34047161 - 34047299
Alignment:
Q  129 tccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttatt 228  Q
    |||| |||||||||||||||  || ||   |||||||||||||||||||||| |||||||||||||||  ||||| |||||| ||||||||||| |||||    
T  34047161 tccgttttaaaatgagtgtcgttttaggtgtttacacacatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatcattatt 34047260  T
Q  229 a--actattggttaattttaaaagtaatactttggaagt 265  Q
    |    ||||||||| |||||||||||||| |||||||||    
T  34047261 aggtgtattggttagttttaaaagtaatattttggaagt 34047299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 12591040 - 12591146
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    ||||||||||| |||||| ||| |||||||||||||||   |||| |||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||    
T  12591040 tttacacacatgttaagatatgcaatgattaaaagaaagataatgattattttaccaaattatccttattaactattggttagttttaaaaataataatt 12591139  T
Q  259 tggaagt 265  Q
    || ||||    
T  12591140 tgaaagt 12591146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 199 - 265
Target Start/End: Original strand, 49402869 - 49402935
Alignment:
Q  199 gaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    ||||| |||||| || |||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  49402869 gaatgtttattttactaaattatccttattaactattgattagttttaaaagtaatactttggaagt 49402935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 25487277 - 25487175
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    ||||||| |||||||||||||| ||||||| ||||| |||||    |||||| |||||||||||| ||||| ||||| |||| ||| |||| ||||||||    
T  25487277 tttacacgcatattaagaaatgcaatgattcaaagagaatga----ttattttaccaaattatccatattagctattagttagtttaaaaattaatactt 25487182  T
Q  259 tggaagt 265  Q
    |||||||    
T  25487181 tggaagt 25487175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 236
Target Start/End: Original strand, 8894926 - 8895040
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    |||| |||||| |||||||||||||||  |||||| ||||| | ||||||||||||||| | | |||||||||||  ||   ||||||| ||||||||||    
T  8894926 tacttcatccgttttaaaatgagtgtcgtttaagatttttatatacatattaagaaatgcattaattaaaagaaagagagatgttattttaccaaattat 8895025  T
Q  222 ccttattaactattg 236  Q
    ||| || ||||||||    
T  8895026 cctaatcaactattg 8895040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 39125797 - 39125719
Alignment:
Q  158 ttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattg 236  Q
    ||||||||||||||||||||||| |||||||||||||||  |||| |||||||  | ||||||||| | |||| |||||    
T  39125797 ttttacacacatattaagaaatgcaatgattaaaagaaagagaattgttatttttctaaattatccattttaattattg 39125719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 29568136 - 29568019
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    ||||||||||| || ||||||| ||||  |||||  ||||||||||||||||||||||| | | |||||||||||   |   ||||||| ||||||||||    
T  29568136 tactccatccgtttcaaaatgaatgtcgtttaaggtttttacacacatattaagaaatgcattaattaaaagaaagaaatatgttattttaccaaattat 29568037  T
Q  222 ccttattaactattggtt 239  Q
     || || |||||||||||    
T  29568036 tctaatcaactattggtt 29568019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 8565957 - 8565878
Alignment:
Q  158 ttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggt 238  Q
    ||||||||||||||||||||||| ||| | || ||||| || ||| || |||| |||||||||| ||||||||||||||||    
T  8565957 ttttacacacatattaagaaatgcaataaatagaagaagat-aatagtaattttaccaaattattcttattaactattggt 8565878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 14607614 - 14607531
Alignment:
Q  151 ttaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattg 236  Q
    |||||| |||||||||||||||| |||||| |  ||||||||||||  |||| ||| ||| |||||||||| |||||||| |||||    
T  14607614 ttaagatttttacacacatattatgaaatgcatggattaaaagaaa--gaattgttgttttaccaaattattcttattaattattg 14607531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 11799696 - 11799587
Alignment:
Q  127 catccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatcctta 226  Q
    |||||| |||||||||| ||||  |||||| |||   |||||||||||||||   |||| ||||||||||  |||| ||||||| |||| | ||||||||    
T  11799696 catccgttttaaaatgaatgtcgtttaagattttataacacatattaagaaaaacaatgtttaaaagaaagagaattgttattttaccacactatcctta 11799597  T
Q  227 ttaactattg 236  Q
    |||| |||||    
T  11799596 ttaattattg 11799587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 26594980 - 26595097
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    |||||| |||| || ||||||| ||||  |||||  ||||||||||||||||||||||  | | |||||||||||  ||   ||||||| ||||||||||    
T  26594980 tactccctccgtttcaaaatgaatgtcgtttaaggtttttacacacatattaagaaatacattaattaaaagaaagagagatgttattttaccaaattat 26595079  T
Q  222 ccttattaactattggtt 239  Q
    ||| || || ||||||||    
T  26595080 cctaatcaattattggtt 26595097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 8989550 - 8989624
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaa 196  Q
    |||||||||||  ||||||| | |||| |||||   ||||||||||||||||||||||| | | |||||||||||    
T  8989550 tactccatccgtcttaaaataaatgtcgattaaagtttttacacacatattaagaaatgcattaattaaaagaaa 8989624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 44938522 - 44938560
Alignment:
Q  151 ttaagagttttacacacatattaagaaatgtaatgatta 189  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  44938522 ttaagatttttacacacatattaagaaatgcaatgatta 44938560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 16757145 - 16757222
Alignment:
Q  158 ttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactatt 235  Q
    ||||||||||||||||||||||  | | |||||||||||  |||  ||||||| |||||| |||||| || |||||||    
T  16757145 ttttacacacatattaagaaatacattaattaaaagaaagagaaatgttattttaccaaactatcctaatcaactatt 16757222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 44556992 - 44557097
Alignment:
Q  134 tttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaacta 233  Q
    |||||||||| ||||  |||||  ||||| ||||||||||| ||||| | | |||||||||||  |||  ||||||| ||||||||||| | || ||||     
T  44556992 tttaaaatgaatgtcgtttaaggtttttatacacatattaaaaaatgcattaattaaaagaaagagaaatgttattttaccaaattatcttaataaactg 44557091  T
Q  234 ttggtt 239  Q
    ||||||    
T  44557092 ttggtt 44557097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 41857461 - 41857401
Alignment:
Q  205 ttatttgaccaaattatccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    |||||| | |||||||| |||  ||| ||||||||| |||||||||||||| |||||||||    
T  41857461 ttattttatcaaattattcttcgtaattattggttagttttaaaagtaataatttggaagt 41857401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 9e-42; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 12983102 - 12983208
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    |||||||||||||||||||||| |||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  12983102 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaactattggttagttttaaaagtaatactt 12983201  T
Q  259 tggaagt 265  Q
    |||||||    
T  12983202 tggaagt 12983208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 18292528 - 18292422
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    |||||||||||||||||||||| |||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  18292528 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaactattggttagttttaaaagtaatactt 18292429  T
Q  259 tggaagt 265  Q
    |||||||    
T  18292428 tggaagt 18292422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 121 - 265
Target Start/End: Original strand, 12977606 - 12977750
Alignment:
Q  121 gtactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaatta 220  Q
    ||||||||| || || ||||||||||||  || ||   |||||||||||||||||||||| |||||||||||||||  |||||||||||| |||||||||    
T  12977606 gtactccattcgtttcaaaatgagtgtcgttttaggtgtttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaatta 12977705  T
Q  221 tccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||    
T  12977706 tccttattaactattagttagttttaaaagtaatactttggaagt 12977750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 122 - 265
Target Start/End: Complemental strand, 18270808 - 18270665
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    |||| |||||| || ||||||||||||  || ||   |||||||||||||||||||||| |||||||||||||||  ||||| |||||| ||||||||||    
T  18270808 tacttcatccgtttcaaaatgagtgtcgttttaggtgtttacacacatattaagaaatgcaatgattaaaagaaatagaatgattattttaccaaattat 18270709  T
Q  222 ccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||    
T  18270708 ccttattaactattgattagttttaaaagtaatactttggaagt 18270665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 6747419 - 6747313
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    |||||||||||||||||||||| |||||||||||||||  |||||||||||| |||||||||||||||||||| |||||||| ||||||| |||||||||    
T  6747419 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaaccattggttagttttaaatgtaatactt 6747320  T
Q  259 tggaagt 265  Q
    |||||||    
T  6747319 tggaagt 6747313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 166 - 265
Target Start/End: Complemental strand, 31883970 - 31883871
Alignment:
Q  166 acatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    ||||||||||||||| |||||||||||||||  ||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31883970 acatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatccttattaactattggttagttttaaaagtaatactttggaagt 31883871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 122 - 265
Target Start/End: Complemental strand, 42286138 - 42285995
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    |||||| |||| |||||||||| ||||  |||||  ||||||| ||||||||||||||| ||||||||||| |||  |||| ||||||| ||||||||||    
T  42286138 tactccctccgttttaaaatgaatgtcgtttaaggtttttacaaacatattaagaaatgcaatgattaaaataaagagaattgttattttaccaaattat 42286039  T
Q  222 ccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    |||||||||||||||||   ||||||||||||||||||||||||    
T  42286038 ccttattaactattggtcggttttaaaagtaatactttggaagt 42285995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 37502512 - 37502406
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    |||||||||||||||||||||  |||||||||||||||  ||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| ||    
T  37502512 tttacacacatattaagaaatacaatgattaaaagaaagagaatgattattttaccaaattatccttattaactattggttagttttaaaagtaatattt 37502413  T
Q  259 tggaagt 265  Q
    |||||||    
T  37502412 tggaagt 37502406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 122 - 265
Target Start/End: Original strand, 715784 - 715927
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    ||||||||||| || ||||||||||||  || ||   |||||||| ||||||||||||| |||||||||||||||   |||  |||||| ||||||||||    
T  715784 tactccatccgtttcaaaatgagtgtcgttttagctctttacacatatattaagaaatgcaatgattaaaagaaagaaaatcattattttaccaaattat 715883  T
Q  222 ccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    |||||||| |||||||||| ||||||||||||||||||||||||    
T  715884 ccttattagctattggttagttttaaaagtaatactttggaagt 715927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 159 - 262
Target Start/End: Complemental strand, 34274987 - 34274884
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    ||||||| |||||||||||||  |||||||||||||||  |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||    
T  34274987 tttacacgcatattaagaaatacaatgattaaaagaaagagaatggttattttaccaaattatctttattaactattggttagttttaaaagtaatactt 34274888  T
Q  259 tgga 262  Q
    ||||    
T  34274887 tgga 34274884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 2297236 - 2297130
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    |||||||||||||||||||||| |||||||||||||||  ||||| |||||| ||||||||||| ||||||||||||||||| |||||||| ||||| ||    
T  2297236 tttacacacatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatctttattaactattggttagttttaaaaataatattt 2297137  T
Q  259 tggaagt 265  Q
    |||||||    
T  2297136 tggaagt 2297130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 25441065 - 25440959
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    ||||||||||||||||||||||||||||||||||||||  ||||| |||||| || ||||||||||||||| |||| | ||| |||||||||||||||||    
T  25441065 tttacacacatattaagaaatgtaatgattaaaagaaagagaatgattattttactaaattatccttattagctatcgattagttttaaaagtaatactt 25440966  T
Q  259 tggaagt 265  Q
    |||||||    
T  25440965 tggaagt 25440959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 265
Target Start/End: Original strand, 31929795 - 31929924
Alignment:
Q  137 aaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaa-ttatccttattaactatt 235  Q
    ||||||||||||  || |||  |||||||| ||||||||||||| ||||||||| |||||  ||||| |||||| |||||| ||||||||||||||||||    
T  31929795 aaaatgagtgtcgttttagatgtttacacatatattaagaaatgcaatgattaacagaaagagaatgtttattttaccaaaattatccttattaactatt 31929894  T
Q  236 ggttaattttaaaagtaatactttggaagt 265  Q
    ||||| ||||||||||||||||||||||||    
T  31929895 ggttagttttaaaagtaatactttggaagt 31929924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 44567002 - 44567105
Alignment:
Q  161 tacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactttg 260  Q
    |||| ||||||||||||||| ||| ||||||| |||| ||||| |||||| | ||||||||||||||||||||||||||| |||||||||||||||||||    
T  44567002 tacatacatattaagaaatgcaataattaaaaaaaaa-gaatgattattttatcaaattatccttattaactattggttagttttaaaagtaatactttg 44567100  T
Q  261 gaagt 265  Q
    |||||    
T  44567101 gaagt 44567105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 40927313 - 40927254
Alignment:
Q  199 gaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    ||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  40927313 gaatgattattttaccaaattatccttattaactattggttagttttaaaagtaatactt 40927254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 47187856 - 47187778
Alignment:
Q  158 ttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattg 236  Q
    |||||||  |||||||| ||||| | |||||||||||||  |||| ||||||| ||||||||||||||||||| |||||    
T  47187856 ttttacatgcatattaaaaaatgcattgattaaaagaaagagaattgttattttaccaaattatccttattaattattg 47187778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 239
Target Start/End: Complemental strand, 48843783 - 48843676
Alignment:
Q  134 tttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttattt--gaccaaattatccttattaac 231  Q
    |||||||||||||||  |||||  ||||||| ||||||||||||||| | |||||||||||||  ||   |||||||   ||||||||||||| || |||    
T  48843783 tttaaaatgagtgtcgtttaaggtttttacatacatattaagaaatgcactgattaaaagaaagagagatgttattttacaccaaattatcctaatcaac 48843684  T
Q  232 tattggtt 239  Q
    ||||||||    
T  48843683 tattggtt 48843676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 40339658 - 40339582
Alignment:
Q  163 cacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggtt 239  Q
    |||||| ||||||||||| | | |||||||||||  |||  ||||||| ||||||||||||| || |||||||||||    
T  40339658 cacacagattaagaaatgcattaattaaaagaaagagaaatgttattttaccaaattatcctaatcaactattggtt 40339582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 4268960 - 4268898
Alignment:
Q  134 tttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaa 196  Q
    |||||||||| ||||  |||||  ||||||||||||||||||||||| | | |||||||||||    
T  4268960 tttaaaatgaatgtcgtttaaggtttttacacacatattaagaaatgcattaattaaaagaaa 4268898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 44057532 - 44057594
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaat 184  Q
    |||||| |||| || |||||||||||   |||||| ||||||||||| |||||||||||||||    
T  44057532 tactccctccgtttcaaaatgagtgttgtttaagatttttacacacaaattaagaaatgtaat 44057594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 35778718 - 35778637
Alignment:
Q  158 ttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggtt 239  Q
    ||||||||| || |||||||||| | |||||| || ||| ||||| || |||| |||||||||||| | | |||||||||||    
T  35778718 ttttacacatatgttaagaaatgcattgattagaataaagtgaatagtaattttaccaaattatccctttcaactattggtt 35778637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 4268857 - 4268793
Alignment:
Q  158 ttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatc 222  Q
    ||||||||||||||||||||||| | | |||||||||||  ||   ||||||| |||||||||||    
T  4268857 ttttacacacatattaagaaatgcattaattaaaagaaagagagatgttattttaccaaattatc 4268793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 18528516 - 18528552
Alignment:
Q  229 aactattggttaattttaaaagtaatactttggaagt 265  Q
    ||||||||||||  |||||||||||||||||||||||    
T  18528516 aactattggttagctttaaaagtaatactttggaagt 18528552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 9e-42; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 127 - 265
Target Start/End: Original strand, 44064380 - 44064518
Alignment:
Q  127 catccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatcctta 226  Q
    |||||| || ||||||||||||| || ||  ||||||||||||||||||||||| |||||||||||||||  ||||| |||||| |||||||||||||||    
T  44064380 catccgtttcaaaatgagtgtctttttaggtttttacacacatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatcctta 44064479  T
Q  227 ttaactattggttaattttaaaagtaatactttggaagt 265  Q
    ||| |||||||||| ||||||||||||||||||||||||    
T  44064480 ttagctattggttagttttaaaagtaatactttggaagt 44064518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 164 - 265
Target Start/End: Complemental strand, 19115574 - 19115473
Alignment:
Q  164 acacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactttggaa 263  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19115574 acacatattaagaaatgcaatgattaaaagaaaaagaatggttattttaccaaattatccttattaactattggttagttttaaaagtaatactttggaa 19115475  T
Q  264 gt 265  Q
    ||    
T  19115474 gt 19115473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 122 - 265
Target Start/End: Complemental strand, 42886979 - 42886836
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    |||||| |||| |||||||||||||||  || ||   |||||| |||||||||||| || |||||||||||||||  |||| ||||||| ||||||||||    
T  42886979 tactccctccgttttaaaatgagtgtcgttttaggtgtttacaaacatattaagaactgcaatgattaaaagaaagagaattgttattttaccaaattat 42886880  T
Q  222 ccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||    
T  42886879 ccttattaactattgattagttttaaaagtaatactttggaagt 42886836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 42571486 - 42571592
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    |||||||||||||||||||||| ||||||||||||| |  |||||||||||| | |||||||||||||||| |||||||||| |||||||||||||||||    
T  42571486 tttacacacatattaagaaatgcaatgattaaaagatagagaatggttattttatcaaattatccttattagctattggttagttttaaaagtaatactt 42571585  T
Q  259 tggaagt 265  Q
    |||||||    
T  42571586 tggaagt 42571592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 134 - 257
Target Start/End: Complemental strand, 4759508 - 4759385
Alignment:
Q  134 tttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaacta 233  Q
    |||||||||||||||  || ||   |||| ||||||||||||||| | |||||||||||||||  |||||||||||| ||||||||||||||||||||||    
T  4759508 tttaaaatgagtgtcgttttaggtgtttatacacatattaagaaaagcaatgattaaaagaaagcgaatggttattttaccaaattatccttattaacta 4759409  T
Q  234 ttggttaattttaaaagtaatact 257  Q
    ||||||| ||||||||||||||||    
T  4759408 ttggttagttttaaaagtaatact 4759385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 50038129 - 50038234
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    |||||||||||||||||||||| |||||||||||||| | ||||| |||||| ||||||||||||||||||| ||||| ||| |||||||||||||||||    
T  50038129 tttacacacatattaagaaatgcaatgattaaaagaaga-gaatgattattttaccaaattatccttattaaatattgcttagttttaaaagtaatactt 50038227  T
Q  259 tggaagt 265  Q
    | |||||    
T  50038228 tagaagt 50038234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 151 - 255
Target Start/End: Complemental strand, 45460869 - 45460763
Alignment:
Q  151 ttaagagttttacacacat--attaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaa 248  Q
    |||||| ||||||||||||  ||||||||||| || ||||||||||||   ||| ||||||| ||||||||||||||||||||||||||||| |||||||    
T  45460869 ttaagatttttacacacatgtattaagaaatgcaaagattaaaagaaataaaattgttattttaccaaattatccttattaactattggttagttttaaa 45460770  T
Q  249 agtaata 255  Q
    |||||||    
T  45460769 agtaata 45460763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 3986049 - 3985974
Alignment:
Q  164 acacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggtt 239  Q
    ||||| ||||||||||| |||||||||||||||  ||||  |||||| ||||||||||||||||||||||||||||    
T  3986049 acacacattaagaaatgcaatgattaaaagaaagagaatttttattttaccaaattatccttattaactattggtt 3985974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 50646052 - 50646125
Alignment:
Q  123 actccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaa 196  Q
    ||||| |||| |||||||||||||||  |||||| ||||||||||||||||| ||||||| | |||||||||||    
T  50646052 actccttccgttttaaaatgagtgtcgtttaagatttttacacacatattaaaaaatgtattaattaaaagaaa 50646125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 11337547 - 11337649
Alignment:
Q  137 aaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattg 236  Q
    ||||||| ||||  |||||  |||||||||||||||| |||||| |||||||| ||||||  |||| || |||| ||||||||||||  || ||||||||    
T  11337547 aaaatgaatgtcgtttaaggtttttacacacatattatgaaatgcaatgattagaagaaagggaatagtaattttaccaaattatccccatcaactattg 11337646  T
Q  237 gtt 239  Q
    |||    
T  11337647 gtt 11337649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 245
Target Start/End: Complemental strand, 8817378 - 8817258
Alignment:
Q  125 tccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatcct 224  Q
    |||||||| |||||||| ||||||| |||||  ||||||| | ||||||||||||||| | |||||||||||  ||   ||||||| | |||||||| ||    
T  8817378 tccatccgttttaaaataagtgtcttttaaggtttttacaaatatattaagaaatgtattaattaaaagaaagagagacgttattttatcaaattattct 8817279  T
Q  225 tattaactattggttaatttt 245  Q
     || |||||||| || |||||    
T  8817278 aatcaactattgatttatttt 8817258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 24357415 - 24357452
Alignment:
Q  223 cttattaactattggttaattttaaaagtaatactttg 260  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  24357415 cttattaactattggttaattttaaaaataatactttg 24357452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 30315550 - 30315433
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    |||||| |||| || ||||||| ||||  |||||  | ||||||||||||||||||||| | | ||||| |||||  ||   ||||||| ||||||||||    
T  30315550 tactccctccgtttcaaaatgaatgtcgtttaaggctgttacacacatattaagaaatgcattaattaagagaaagagagatgttattttaccaaattat 30315451  T
Q  222 ccttattaactattggtt 239  Q
    ||| || |||||||||||    
T  30315450 cctaatcaactattggtt 30315433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 48901940 - 48901873
Alignment:
Q  129 tccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaa 196  Q
    |||| |||||||||||||||  |||||  ||||||| ||||||||||||||| | | |||||||||||    
T  48901940 tccgttttaaaatgagtgtcgtttaagttttttacatacatattaagaaatgcattaattaaaagaaa 48901873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 7230816 - 7230862
Alignment:
Q  134 tttaaaatgagtgtctattaagagttttacacacatattaagaaatg 180  Q
    |||||||||| ||||  |||||| |||||||||||||||||||||||    
T  7230816 tttaaaatgaatgtcgtttaagatttttacacacatattaagaaatg 7230862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 54403217 - 54403303
Alignment:
Q  151 ttaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggtt 239  Q
    |||||| ||||||||||||  |||||||| |||  | ||||| |||   ||| ||||||| || |||||||||||||||||||||||||    
T  54403217 ttaagatttttacacacat--taagaaatataaaaactaaaacaaagataattgttattttactaaattatccttattaactattggtt 54403303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 121 - 265
Target Start/End: Original strand, 4850417 - 4850561
Alignment:
Q  121 gtactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaatta 220  Q
    ||||||||| || || ||||||||||||  || ||   |||||||||||||||||||||| |||||||||||||||  |||||||||||| |||||||||    
T  4850417 gtactccattcgtttcaaaatgagtgtcgttttaggtgtttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaatta 4850516  T
Q  221 tccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    |||||||||||||||||||| |||||||||||||| |||||||||    
T  4850517 tccttattaactattggttagttttaaaagtaatattttggaagt 4850561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 159 - 257
Target Start/End: Complemental strand, 32429480 - 32429382
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatact 257  Q
    |||||||||||||||||||||| |||||||||||||||  ||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||    
T  32429480 tttacacacatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatctttattaactattggttagttttaaaagtaatact 32429382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 122 - 262
Target Start/End: Complemental strand, 29400175 - 29400035
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    |||||| |||| ||||||||| ||||   || |||  |||||||||||||||||||||| |||||||||||||||  |||||||||||| ||||||||||    
T  29400175 tactccctccgttttaaaatgtgtgttgttttagatctttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattat 29400076  T
Q  222 ccttattaactattggttaattttaaaagtaatactttgga 262  Q
    ||||||||  ||||||||| |||||| || |||||||||||    
T  29400075 ccttattagttattggttagttttaatagcaatactttgga 29400035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 259
Target Start/End: Complemental strand, 19689518 - 19689423
Alignment:
Q  164 acacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatacttt 259  Q
    ||||||||||| ||||| |||||||||||||||   ||||||||||| ||||||||||  ||||||||||||| ||| ||||||||||||||||||    
T  19689518 acacatattaaaaaatgcaatgattaaaagaaagataatggttattttaccaaattattattattaactattgtttagttttaaaagtaatacttt 19689423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 13597902 - 13597980
Alignment:
Q  158 ttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattg 236  Q
    |||||||||||||||||||||||||| || |||||||||  |||| ||||||| ||||||||||| |||||||||||||    
T  13597902 ttttacacacatattaagaaatgtaaggaataaaagaaagagaattgttattttaccaaattatctttattaactattg 13597980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 13503785 - 13503870
Alignment:
Q  151 ttaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattg 236  Q
    |||||| ||||||||||||||||||||||| | | |||||||||||  |||  ||||||| ||||||||||||| || ||||||||    
T  13503785 ttaagatttttacacacatattaagaaatgcattaattaaaagaaagagaaatgttattttaccaaattatcctaataaactattg 13503870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 19689295 - 19689250
Alignment:
Q  215 aaattatccttattaactattggttaattttaaaagtaatactttg 260  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  19689295 aaattatccttattaactattggttagttttaaaagtaatactttg 19689250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 1502695 - 1502782
Alignment:
Q  152 taagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggtt 239  Q
    ||||| ||||||| ||||| ||||||||| | |||||||||||||  ||   ||||||| ||||||||||| | ||||||||||||||    
T  1502695 taagatttttacatacataataagaaatgcattgattaaaagaaatagagatgttattttaccaaattatcttaattaactattggtt 1502782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 13011289 - 13011377
Alignment:
Q  151 ttaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggtt 239  Q
    |||||| ||||||||||||||||||||||| | | |||||||||||  ||   ||||||| ||||||||||| | || |||||| ||||    
T  13011289 ttaagatttttacacacatattaagaaatgcattaattaaaagaaagagagatgttattttaccaaattatcttaatcaactatcggtt 13011377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 3988669 - 3988769
Alignment:
Q  134 tttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaacta 233  Q
    |||||||||| ||||  |||||| ||||||||||||||| |||||||  || |||||||||||  ||   ||||||| ||||||||||| | || |||||    
T  3988669 tttaaaatgaatgtcgtttaagatttttacacacatattgagaaatg-cataattaaaagaaagagagatgttattttaccaaattatcataatcaacta 3988767  T
Q  234 tt 235  Q
    ||    
T  3988768 tt 3988769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 122 - 264
Target Start/End: Original strand, 396137 - 396279
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    ||||||||||| || ||||||||||||  || ||   |||||||||||||||||||||| |||||||||||||||  ||||| |||||| ||||||||||    
T  396137 tactccatccgtttcaaaatgagtgtcgttttaggtctttacacacatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattat 396236  T
Q  222 ccttattaactattggttaattttaaaagtaatactttggaag 264  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  396237 ccttattaactattggttagttttaaaagtaatactatggaag 396279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 15160406 - 15160512
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    |||||||||||||||||||||| |||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||    
T  15160406 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaactattggttagttttaaaagtaatattt 15160505  T
Q  259 tggaagt 265  Q
    |||||||    
T  15160506 tggaagt 15160512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 122 - 265
Target Start/End: Original strand, 39765783 - 39765926
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    |||||| |||| || ||||||||||||  || ||   |||||||||||||||||||||  |||||||||||||||  ||||| |||||| ||||||||||    
T  39765783 tactccctccgtttcaaaatgagtgtcgttttaggtgtttacacacatattaagaaatacaatgattaaaagaaagagaatgcttattttaccaaattat 39765882  T
Q  222 ccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  39765883 ccttattaactattggttagttttaaaagtaatactttggaagt 39765926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 17656100 - 17655994
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    |||| ||||||||||||||||||||||||||| ||||||  |||| |||||| ||||||||||||||||||  ||||||||| |||||||||||||||||    
T  17656100 tttatacacatattaagaaatgtaatgattaagagaaaaataatgattattttaccaaattatccttattagttattggttagttttaaaagtaatactt 17656001  T
Q  259 tggaagt 265  Q
    || ||||    
T  17656000 tgcaagt 17655994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 159 - 260
Target Start/End: Original strand, 37559493 - 37559594
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    |||||||||||||||||||||| ||||||||||| |||  ||||| |||||| ||  |||||| |||||||||||||||||| |||||||||||||||||    
T  37559493 tttacacacatattaagaaatgcaatgattaaaataaagagaatgattattttacataattattcttattaactattggttagttttaaaagtaatactt 37559592  T
Q  259 tg 260  Q
    ||    
T  37559593 tg 37559594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 265
Target Start/End: Complemental strand, 43724612 - 43724469
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    |||||| |||| || ||||||||||||  || |||  ||||||||| || ||| ||||| |||||||||||||||  ||||| |||||| ||||||||||    
T  43724612 tactccttccgtttcaaaatgagtgtcgttttagatgtttacacacgtactaaaaaatgcaatgattaaaagaaagagaatgattattttaccaaattat 43724513  T
Q  222 ccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
      ||||||||||||||||| |||||||||||||| | |||||||    
T  43724512 ttttattaactattggttagttttaaaagtaatattatggaagt 43724469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 159 - 262
Target Start/End: Complemental strand, 40362628 - 40362525
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    |||||||| ||||||||||||| |||| ||| || |||  ||||| |||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||    
T  40362628 tttacacatatattaagaaatgcaatgcttagaaaaaagagaatgcttattttaccaaattatctttattaactattggttagttttaaaagtaatattt 40362529  T
Q  259 tgga 262  Q
    ||||    
T  40362528 tgga 40362525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 24245129 - 24245247
Alignment:
Q  121 gtactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaatta 220  Q
    ||||||| |||| || ||||||| ||||  |||||| ||||||||||||||||||||||  |||||||| || |||  |||| || |||| |||||||||    
T  24245129 gtactccctccgtttcaaaatgaatgtcgtttaagatttttacacacatattaagaaatccaatgattagaaaaaagggaatagtaattttaccaaatta 24245228  T
Q  221 tccttattaactattggtt 239  Q
    ||| ||| |||| ||||||    
T  24245229 tccctatcaacttttggtt 24245247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 137 - 245
Target Start/End: Complemental strand, 12339937 - 12339831
Alignment:
Q  137 aaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattg 236  Q
    ||||||| ||||  |||||  ||||||||||||||||||||||| ||||||||||||| |  |||| ||||||| || ||||||| |||||| | |||||    
T  12339937 aaaatgaatgtcgtttaaggtttttacacacatattaagaaatgcaatgattaaaagaga--gaattgttattttacaaaattattcttattgattattg 12339840  T
Q  237 gttaatttt 245  Q
    |||| ||||    
T  12339839 gttagtttt 12339831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 5295355 - 5295393
Alignment:
Q  158 ttttacacacatattaagaaatgtaatgattaaaagaaa 196  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  5295355 ttttacacacatattaagaaatgtattgattaaaagaaa 5295393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 236
Target Start/End: Original strand, 43969977 - 43970078
Alignment:
Q  134 tttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaacta 233  Q
    |||||||||| || |  |||||| ||||| ||||||| ||||||||| | | ||||||||||||  ||| ||||||| | ||||||||||| || |||||    
T  43969977 tttaaaatgaatgccgtttaagatttttatacacatactaagaaatgcattaattaaaagaaaaaaaat-gttattttatcaaattatcctaatcaacta 43970075  T
Q  234 ttg 236  Q
    |||    
T  43970076 ttg 43970078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 34796630 - 34796711
Alignment:
Q  158 ttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggtt 239  Q
    |||||||||||| |||||||||| | | |||||||||||  ||   ||||||| | ||||||||||| || |||||||||||    
T  34796630 ttttacacacatgttaagaaatgcattaattaaaagaaagagatatgttattttatcaaattatcctaatcaactattggtt 34796711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 122 - 264
Target Start/End: Original strand, 7905923 - 7906065
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    |||||| |||| |||||||||||||||  || ||   |||||||||||||||||||||| |||||||||||||||  |||| ||||||| ||||||||||    
T  7905923 tactccctccgttttaaaatgagtgtcgttttaggtgtttacacacatattaagaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 7906022  T
Q  222 ccttattaactattggttaattttaaaagtaatactttggaag 264  Q
    |||||||||||||| |||| |||||||||||||||||||||||    
T  7906023 ccttattaactatttgttagttttaaaagtaatactttggaag 7906065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 122 - 265
Target Start/End: Original strand, 38510172 - 38510315
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    ||||||||||| |||||||||||||||  || |||  |||||||||||||||| ||||| |||||||||||||||| ||| |||||||| ||||||||||    
T  38510172 tactccatccgttttaaaatgagtgtcgttttagatctttacacacatattaaaaaatgcaatgattaaaagaaaaagaaaggttattttaccaaattat 38510271  T
Q  222 ccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
      ||||||  ||||||||| ||||||||||||||||||||||||    
T  38510272 aattattagttattggttagttttaaaagtaatactttggaagt 38510315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 164 - 265
Target Start/End: Original strand, 51733463 - 51733564
Alignment:
Q  164 acacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactttggaa 263  Q
    ||||||||||||||||| |||||||||||||||  |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  51733463 acacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattattcttattaactattggttagttttaaaagtaatactttggaa 51733562  T
Q  264 gt 265  Q
    ||    
T  51733563 gt 51733564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 122 - 265
Target Start/End: Original strand, 22220286 - 22220429
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    |||| |||||| || ||||||||||||  || ||   |||||||||||||||||||||| ||||||||||||||   |||||||||||| ||||||||||    
T  22220286 tacttcatccgtttcaaaatgagtgtcgttttaggtctttacacacatattaagaaatgcaatgattaaaagaatgagaatggttattttaccaaattat 22220385  T
Q  222 ccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    |||||||| |||||||||| |||||||||||||| |||||||||    
T  22220386 ccttattagctattggttagttttaaaagtaatattttggaagt 22220429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 122 - 265
Target Start/End: Complemental strand, 37624786 - 37624643
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    ||||||||||| |||||||||||||||  || ||   ||||||| |||||||||||||| |||||||||||||||  ||||| |||||| ||||||||||    
T  37624786 tactccatccgttttaaaatgagtgtcgttttaggtgtttacactcatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattat 37624687  T
Q  222 ccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    ||||||||| ||||||||| |||||||| ||||||||| |||||    
T  37624686 ccttattaattattggttagttttaaaaataatacttttgaagt 37624643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 4505529 - 4505423
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    |||||| ||||||||||||||| |||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||    
T  4505529 tttacaaacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaactattggttagttttaaaactaatactt 4505430  T
Q  259 tggaagt 265  Q
    || ||||    
T  4505429 tgaaagt 4505423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 25231368 - 25231262
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    |||||||||||||||||||||| |||||||||||||||  ||||| |||||| | ||||||||| |||||||||||||||||| ||||||||||||||||    
T  25231368 tttacacacatattaagaaatgcaatgattaaaagaaagagaatgattattttatcaaattatctttattaactattggttaagtttaaaagtaatactt 25231269  T
Q  259 tggaagt 265  Q
    |||||||    
T  25231268 tggaagt 25231262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 52915506 - 52915612
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    |||| ||||||||||||||||  |||||||||||||||  ||||| |||||| ||||||||||| |||||| |||||||||| |||||||||||||||||    
T  52915506 tttatacacatattaagaaatacaatgattaaaagaaagagaatgattattttaccaaattatctttattagctattggttagttttaaaagtaatactt 52915605  T
Q  259 tggaagt 265  Q
    |||||||    
T  52915606 tggaagt 52915612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 169 - 265
Target Start/End: Original strand, 21864357 - 21864453
Alignment:
Q  169 tattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    |||||||||||  |||||||||||||||  ||||| |||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  21864357 tattaagaaatacaatgattaaaagaaagagaatgattattttaccaaattatccttattaattattggttagttttaaaagtaatactttggaagt 21864453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 169 - 265
Target Start/End: Original strand, 21920218 - 21920314
Alignment:
Q  169 tattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    |||||||||||  |||||||||||||||  ||||| |||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  21920218 tattaagaaatacaatgattaaaagaaagagaatgattattttaccaaattatccttattaattattggttagttttaaaagtaatactttggaagt 21920314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 43337711 - 43337817
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    ||||||||| |||| ||||||  |||||||||||||||  ||||| |||||| | ||||||||| ||||||||||||||||| |||||||||||||||||    
T  43337711 tttacacacgtattgagaaatacaatgattaaaagaaagagaatgattattttatcaaattatctttattaactattggttagttttaaaagtaatactt 43337810  T
Q  259 tggaagt 265  Q
    || ||||    
T  43337811 tgcaagt 43337817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 36558258 - 36558333
Alignment:
Q  164 acacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggtt 239  Q
    ||||| ||||||||||| |||||||||||||||   |||  |||||| ||||||||||||||||||||||||||||    
T  36558258 acacacattaagaaatgcaatgattaaaagaaagataatttttattttaccaaattatccttattaactattggtt 36558333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 56555727 - 56555789
Alignment:
Q  200 aatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactttggaa 263  Q
    ||||||||||| |||||||||||||||||||||||| |||| |||||||||||||| |||||||    
T  56555727 aatggttattttaccaaattatccttattaactatt-gttagttttaaaagtaatattttggaa 56555789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 41496409 - 41496332
Alignment:
Q  158 ttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactatt 235  Q
    ||||||||||||||||| ||||||| | |||||||||||  |||  ||||||| ||||||||||||| || |||||||    
T  41496409 ttttacacacatattaaaaaatgtattaattaaaagaaatagaaatgttatttcaccaaattatcctaatcaactatt 41496332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 44868205 - 44868282
Alignment:
Q  158 ttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattg 236  Q
    |||||||||||||||||||||| || | ||||||| |||| |||| ||||||| |||||||| |||| || ||||||||    
T  44868205 ttttacacacatattaagaaatatattaattaaaa-aaaaagaattgttattttaccaaattgtcctaatcaactattg 44868282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 249
Target Start/End: Complemental strand, 28308919 - 28308826
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaa-atgaatggttatttgaccaaattatccttatta---actattggttaattttaaaa 249  Q
    |||||||| ||||||||||||| ||||||||||||||| || |||  |||||| | |||||||| |||||||   | ||||||||||||||||||    
T  28308919 tttacacatatattaagaaatgcaatgattaaaagaaagataaat-attattttatcaaattattcttattaattagtattggttaattttaaaa 28308826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 10573069 - 10573122
Alignment:
Q  121 gtactccatccgatttaaaatgagtgtctattaagagttttacacacatattaa 174  Q
    ||||| |||||| |||||||||| ||||  |||||| |||||||||||||||||    
T  10573069 gtacttcatccgctttaaaatgaatgtcgtttaagatttttacacacatattaa 10573122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 44061234 - 44061117
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    ||||||||||| |||||||||| ||||  |||||  ||||| |||| |||||||||||| | | ||||| ||||||  |   ||||||| || |||||||    
T  44061234 tactccatccgttttaaaatgaatgtcgtttaaggtttttatacacgtattaagaaatgcattaattaagagaaaaatagatgttattttactaaattat 44061135  T
Q  222 ccttattaactattggtt 239  Q
    | | || |||||||||||    
T  44061134 cataatcaactattggtt 44061117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 47817979 - 47817862
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    |||||| |||| || ||||||| ||||  |||||  ||||| ||||||||||||||||| | | |||||||||||  ||   ||||||| ||||| ||||    
T  47817979 tactccctccgtttcaaaatgaatgtcgtttaagttttttatacacatattaagaaatgcattaattaaaagaaagagagatgttattttaccaatttat 47817880  T
Q  222 ccttattaactattggtt 239  Q
    | | || |||||||||||    
T  47817879 cataatcaactattggtt 47817862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 236
Target Start/End: Original strand, 30779948 - 30780050
Alignment:
Q  128 atccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttat 227  Q
    ||||| |||||||| ||||||  |||||| |||||||||||||||| |||||| | | ||||||| |||||     ||||||| || |||||||||| ||    
T  30779948 atccgttttaaaataagtgtcatttaaga-ttttacacacatattaggaaatgaattaattaaaaaaaaat-----gttattttactaaattatcctaat 30780041  T
Q  228 taactattg 236  Q
     ||||||||    
T  30780042 caactattg 30780050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 122 - 265
Target Start/End: Original strand, 3733 - 3876
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    |||||| |||| |||||||||||||||  || ||   |||||||||||| ||||||||| |||||||||||||||   |||| |||||| ||||||||||    
T  3733 tactccttccgttttaaaatgagtgtcgttttaggtctttacacacataataagaaatgcaatgattaaaagaaagaaaatgattattttaccaaattat 3832  T
Q  222 ccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    |||||||| |||||||||| ||||||||||||||||||||||||    
T  3833 ccttattagctattggttagttttaaaagtaatactttggaagt 3876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 118 - 265
Target Start/End: Original strand, 17695744 - 17695891
Alignment:
Q  118 aaagtactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaa 217  Q
    |||||||||  |||| || ||||||||||||  || |||  |||||||||||||||||||||| | ||||||| ||||   |||||||||||| ||||||    
T  17695744 aaagtactctctccgtttcaaaatgagtgtcgttttagatgtttacacacatattaagaaatgcagtgattaagagaatgagaatggttattttaccaaa 17695843  T
Q  218 ttatccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  17695844 ttatctttattaactattggttagttttaaaagtaatactttggaagt 17695891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 115 - 265
Target Start/End: Complemental strand, 45423855 - 45423705
Alignment:
Q  115 ttgaaagtactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgacc 214  Q
    |||||| |||||| |||  |||||||||| ||||  |||| | ||||||||||||||||||||||| ||||||||||| |||  ||||  |||||| |||    
T  45423855 ttgaaattactccctccattttaaaatgaatgtcgtttaaaatttttacacacatattaagaaatgaaatgattaaaataaatagaattattattttacc 45423756  T
Q  215 aaattatccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    |||||||||||||||| ||||||||| |||||||| |||||||||||||||    
T  45423755 aaattatccttattaattattggttagttttaaaactaatactttggaagt 45423705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 134 - 265
Target Start/End: Complemental strand, 27986256 - 27986125
Alignment:
Q  134 tttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaacta 233  Q
    |||||||||||||||  || ||   |||||||||||||||||||||| ||| ||||||| |||  |||||||||||| |||||||||||||||||| |||    
T  27986256 tttaaaatgagtgtcgttttaggtctttacacacatattaagaaatgcaattattaaaataaagagaatggttattttaccaaattatccttattagcta 27986157  T
Q  234 ttggttaattttaaaagtaatactttggaagt 265  Q
    ||| ||| ||||||||||||||||||||||||    
T  27986156 ttgattagttttaaaagtaatactttggaagt 27986125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 134 - 265
Target Start/End: Complemental strand, 28072788 - 28072657
Alignment:
Q  134 tttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaacta 233  Q
    |||||||||||||||  || ||   |||||||||||||||||||||| ||| ||||||| |||  |||||||||||| |||||||||||||||||| |||    
T  28072788 tttaaaatgagtgtcgttttaggtctttacacacatattaagaaatgcaattattaaaataaagagaatggttattttaccaaattatccttattagcta 28072689  T
Q  234 ttggttaattttaaaagtaatactttggaagt 265  Q
    ||| ||| ||||||||||||||||||||||||    
T  28072688 ttgattagttttaaaagtaatactttggaagt 28072657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 137 - 265
Target Start/End: Original strand, 22620272 - 22620400
Alignment:
Q  137 aaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattg 236  Q
    ||||||||||||  || |||  |||||||||||||||| ||||| |||||||||||||||  |||||||||||| || ||||||||||| ||||||||||    
T  22620272 aaaatgagtgtcgttttagatgtttacacacatattaaaaaatgcaatgattaaaagaaagagaatggttattttactaaattatccttgttaactattg 22620371  T
Q  237 gttaattttaaaagtaatactttggaagt 265  Q
     |||  |||||||||||||||||||||||    
T  22620372 attagctttaaaagtaatactttggaagt 22620400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 166 - 265
Target Start/End: Complemental strand, 5717698 - 5717599
Alignment:
Q  166 acatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    ||||||||| ||||| |||||||||||||||  ||||| |||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  5717698 acatattaaaaaatgcaatgattaaaagaaagagaatgattattttaccaaattatccttattaaatattggttagttttaaaagtaatactttggaagt 5717599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 176 - 265
Target Start/End: Complemental strand, 35799378 - 35799289
Alignment:
Q  176 aaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    ||||| |||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  35799378 aaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaactattggttagttttaaaagtaatactttgaaagt 35799289  T

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Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 43427248 - 43427353
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    |||||||||||||||||||||| ||| ||||||| |||  |||||||||||| |||||||||||||||||| ||||| |||| |||||||| ||||||||    
T  43427248 tttacacacatattaagaaatgcaat-attaaaataaagagaatggttattttaccaaattatccttattagctattagttagttttaaaaataatactt 43427346  T
Q  259 tggaagt 265  Q
    |||||||    
T  43427347 tggaagt 43427353  T

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Target: chr2; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 129 - 265
Target Start/End: Complemental strand, 14286153 - 14286018
Alignment:
Q  129 tccgatttaaaatgagtgtc-tattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttat 227  Q
    |||| ||||||||||||||| | ||| |||||| ||||||||||||||||||| |||||||||||||||  | ||  |||||| | ||||||||||||||    
T  14286153 tccgttttaaaatgagtgtcgttttaggagttt-acacacatattaagaaatgcaatgattaaaagaaagaggata-ttattttatcaaattatccttat 14286056  T
Q  228 taactattggttaattttaaaagtaatactttggaagt 265  Q
    ||||||||||||| |||||||||| |||||||| ||||    
T  14286055 taactattggttagttttaaaagttatactttgaaagt 14286018  T

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Target: chr2; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 32022860 - 32022939
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggt 238  Q
    ||||||||||||||||||||||||||||||||||||||  ||||| |||||| ||||||||||| |||||||||||||||    
T  32022860 tttacacacatattaagaaatgtaatgattaaaagaaagagaatgattattttaccaaattatctttattaactattggt 32022939  T

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Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 254
Target Start/End: Complemental strand, 16792715 - 16792584
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    |||||| |||| |||||||||| ||| | ||| | |||| |||||  |||||||||||| ||| |||| ||||||   |||| |||||| ||||||||||    
T  16792715 tactccctccgttttaaaatgaatgtgttttaggtgttt-acacatgtattaagaaatgcaattattataagaaagataatgcttattttaccaaattat 16792617  T
Q  222 ccttattaactattggttaattttaaaagtaat 254  Q
    ||||||||||||||||||| |||||||||||||    
T  16792616 ccttattaactattggttagttttaaaagtaat 16792584  T

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Target: chr2; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 199 - 265
Target Start/End: Original strand, 16463032 - 16463098
Alignment:
Q  199 gaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactttggaagt 265  Q
    |||| ||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  16463032 gaattgttattttaccaaattatccttgttaactattggttagttttaaaagtaatactttggaagt 16463098  T

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Target: chr2; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 45301956 - 45301858
Alignment:
Q  159 tttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggttaattttaaaagtaatactt 258  Q
    |||||||||||||||| ||||| ||| |||||||||||  |||||||||||| | ||||||||  |||| | |||||||||| |||||||||||||||||    
T  45301956 tttacacacatattaataaatgcaataattaaaagaaa--gaatggttattttatcaaattatatttatcagctattggttagttttaaaagtaatactt 45301859  T

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Target: chr2; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 33056131 - 33056014
Alignment:
Q  122 tactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattat 221  Q
    ||||||||||| |||||||||| ||||  |||||| ||||||||||||||||| ||||||  | |||||||||||  ||   ||||||| ||||||||||    
T  33056131 tactccatccgttttaaaatgaatgtcgtttaagaattttacacacatattaaaaaatgtcttaattaaaagaaagagagatgttattttaccaaattat 33056032  T
Q  222 ccttattaactattggtt 239  Q
    | | || |||||||||||    
T  33056031 cataatcaactattggtt 33056014  T

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Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 37038697 - 37038799
Alignment:
Q  137 aaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattg 236  Q
    ||||||||||||  |||||| ||||||||||||||||||||||  | | |||||||||||  ||   ||||||| ||||||||||||| || ||||||||    
T  37038697 aaaatgagtgtcgtttaagatttttacacacatattaagaaatacattaattaaaagaaagagagatgttattttaccaaattatcctaatcaactattg 37038796  T
Q  237 gtt 239  Q
    |||    
T  37038797 gtt 37038799  T

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Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 8540250 - 8540166
Alignment:
Q  151 ttaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactatt 235  Q
    |||||| ||||||||||||||||||||||| | | |||||||||||| ||   ||||||| | ||||||||||| || |||||||    
T  8540250 ttaagatttttacacacatattaagaaatgcattaattaaaagaaaaagagatgttattttatcaaattatcctaatcaactatt 8540166  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 681675 - 681737
Alignment:
Q  118 aaagtactccatccgatttaaaatgagtgtctattaagagttttacacacatattaagaaatg 180  Q
    |||||||||| |||| || ||||||||||||  |||||  |||| ||||||||||||||||||    
T  681675 aaagtactccctccgtttcaaaatgagtgtcgtttaaggtttttgcacacatattaagaaatg 681737  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 236
Target Start/End: Complemental strand, 10195903 - 10195801
Alignment:
Q  134 tttaaaatgagtgtctattaagagttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaacta 233  Q
    |||||||||||||||  |||||  ||||||| |  ||||||| |||||| | |||||||||||  ||   ||||||| ||||||||||||| || |||||    
T  10195903 tttaaaatgagtgtcgtttaaggtttttacatatttattaaggaatgtattaattaaaagaaagagagatgttattttaccaaattatcctaatcaacta 10195804  T
Q  234 ttg 236  Q
    |||    
T  10195803 ttg 10195801  T

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Target: scaffold0010 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 153511 - 153430
Alignment:
Q  158 ttttacacacatattaagaaatgtaatgattaaaagaaaatgaatggttatttgaccaaattatccttattaactattggtt 239  Q
    ||||||||| ||||||||||||| ||||| || ||||||  ||||  |||||| | ||||||||||| ||||||||||||||    
T  153511 ttttacacatatattaagaaatgcaatgactagaagaaagagaataattattttatcaaattatcctcattaactattggtt 153430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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