View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20232_low_6 (Length: 258)
Name: NF20232_low_6
Description: NF20232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20232_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 50868048 - 50868279
Alignment:
| Q |
16 |
tgaagtttgtaggattgatggttcagtgagattggaactatgatataaaagtgcaggtcagtaccaacatttcannnnnnnnnn-catgtgaaaaccatt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50868048 |
tgaagtttgtaggattgatggttcagtgagattggaactatgatataaaagtgcaggtcagtaccaacatttcatttttttttttcatgtgaaaaccatt |
50868147 |
T |
|
| Q |
115 |
tgtttatttctctgtaaaatacatgccatgtgaactgtttttaatctcttcaaaattgtgtttttaagatttgattttttcttcctttgtgcatatttag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50868148 |
tgtttatttctctgtaaaatacatgccatgtgaactgtttttaatctcttcaaaattgtgtttttaagatttgattttttcttcctttgtgcatatttag |
50868247 |
T |
|
| Q |
215 |
aaggatggcaattttgacagaacattaagtat |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
50868248 |
aaggatggcaattttgacagaacattaagtat |
50868279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 50807830 - 50807598
Alignment:
| Q |
16 |
tgaagtttgtaggattgatggttcagtgagattggaactatgatataaaagtgcaggtcagtaccaacatttcannnnnnnnnn--catgtgaaaaccat |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
50807830 |
tgaagtttgtaggattgatggttcagtgagattggaactatgatataaaagtgcaggtcagtaccaacatttctatttttttttttcatgtgaaaaccat |
50807731 |
T |
|
| Q |
114 |
ttgtttatttctctgtaaaatacatgccatgtgaactgtttttaatctcttcaaaattgtgtttttaagatttgattttttcttcctttgtgcatattta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50807730 |
ttgtttatttctctgtaaaatacatgccatgtgaactgtttttaatctcttcaaaattgtgtttttaagatttgattttttcttcctttgtgcatattta |
50807631 |
T |
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| Q |
214 |
gaaggatggcaattttgacagaacattaagtat |
246 |
Q |
| |
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| T |
50807630 |
gaaggatggcaattttgacagaacattaagtat |
50807598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 19055608 - 19055835
Alignment:
| Q |
21 |
tttgtaggattgatggttcagtgagattggaactatgatataaaagtgcaggtcagtaccaacatttcannnnnnnnnn--catgtgaaaaccatttgtt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
19055608 |
tttgtaggattgatggttcagtgagattggaactatgatataaaagtgcaggtcagtaccaacgtttcattttttttttttcatgtgaaaaccatttgtt |
19055707 |
T |
|
| Q |
119 |
tatttctctgtaaaatacatgccatgtgaactgtttttaatctcttcaaaattgtgtttttaagatttgattttttcttcctttgtgcatatttagaagg |
218 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19055708 |
tatttctctgtaaaatacatgcaatgtgaactttttttaatctcttcaaaattgtgtttttaagatttgattttttcttcctttgtgcatatttagaagg |
19055807 |
T |
|
| Q |
219 |
atggcaattttgacagaacattaagtat |
246 |
Q |
| |
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|||||||||||||| ||||||||||||| |
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|
| T |
19055808 |
atggcaattttgaccgaacattaagtat |
19055835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 4633368 - 4633331
Alignment:
| Q |
181 |
agatttgattttttcttcctttgtgcatatttagaagg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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|
| T |
4633368 |
agatttgattttttcttcctttgtgcatatttagaagg |
4633331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 39750303 - 39750275
Alignment:
| Q |
218 |
gatggcaattttgacagaacattaagtat |
246 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
39750303 |
gatggcaattttgacagaacattaagtat |
39750275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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