View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20233_low_11 (Length: 270)

Name: NF20233_low_11
Description: NF20233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20233_low_11
NF20233_low_11
[»] chr5 (3 HSPs)
chr5 (141-270)||(29499802-29499931)
chr5 (14-81)||(29499675-29499742)
chr5 (14-81)||(16967376-16967443)
[»] chr1 (3 HSPs)
chr1 (14-81)||(27260607-27260674)
chr1 (17-74)||(48872731-48872788)
chr1 (14-74)||(38289677-38289737)
[»] chr4 (3 HSPs)
chr4 (14-81)||(25467900-25467967)
chr4 (14-81)||(33085265-33085332)
chr4 (20-81)||(50645530-50645591)
[»] chr2 (2 HSPs)
chr2 (14-72)||(41317312-41317370)
chr2 (14-50)||(41317219-41317255)
[»] chr8 (4 HSPs)
chr8 (15-74)||(40649577-40649636)
chr8 (14-50)||(12946678-12946714)
chr8 (14-57)||(7612107-7612150)
chr8 (14-72)||(12946526-12946584)
[»] chr7 (2 HSPs)
chr7 (14-74)||(2819366-2819426)
chr7 (14-74)||(11778691-11778751)
[»] chr6 (1 HSPs)
chr6 (14-74)||(28982539-28982599)


Alignment Details
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 141 - 270
Target Start/End: Original strand, 29499802 - 29499931
Alignment:
Q  141 tgtcacaaaagttgttgaaaatcggatgtgaaaacattattcctaataagtttattgtatgggtcccatcttattttgtgggaccataatttcatgcaat 240  Q
    ||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29499802 tgtcacaaaagttgttgaaaatcggatgtcaaaatattattcctcataagtttattgtatgggtcccatcttattttgtgggaccataatttcatgcaat 29499901  T
Q  241 gcaatgtgcatcaggtgacacctttgttat 270  Q
    ||||||||||||||||||||||||||||||    
T  29499902 gcaatgtgcatcaggtgacacctttgttat 29499931  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 29499675 - 29499742
Alignment:
Q  14 attttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataac 81  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  29499675 attttgacatccaatttttaacaatttttagggataatctttttcctcaattcttattggatgataac 29499742  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 16967376 - 16967443
Alignment:
Q  14 attttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataac 81  Q
    ||||||||||| |||||||||||| ||||||||||||  ||||||||| |||||||||||||||||||    
T  16967376 attttgacatctaattttcaacaacttttagggacaacatttttcctctattcttattggatgataac 16967443  T

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Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 27260607 - 27260674
Alignment:
Q  14 attttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataac 81  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||  ||||||||||||||||||    
T  27260607 attttgacatccaattttcaacaatttttagagacaatatttttcctctgttcttattggatgataac 27260674  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 48872788 - 48872731
Alignment:
Q  17 ttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattgga 74  Q
    |||||||||||||||||| || || | ||||||| |||||||||| ||||||||||||    
T  48872788 ttgacatccaattttcaataacttgttgggacaacctttttcctctattcttattgga 48872731  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 38289737 - 38289677
Alignment:
Q  14 attttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattgga 74  Q
    ||||||||||| |||||||||||| |||||| |||||  ||||| ||| ||||||||||||    
T  38289737 attttgacatcaaattttcaacaacttttagagacaactttttttctctattcttattgga 38289677  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 25467967 - 25467900
Alignment:
Q  14 attttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataac 81  Q
    |||||||||| ||||||||||||| ||||||||| ||| ||||| ||| |||||||||||||||||||    
T  25467967 attttgacatgcaattttcaacaacttttagggataattttttttctctattcttattggatgataac 25467900  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 33085332 - 33085265
Alignment:
Q  14 attttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataac 81  Q
    ||||||| || |||||||||| || ||||| ||||||||||||||||  ||| |||||||||||||||    
T  33085332 attttgatattcaattttcaataacttttatggacaatctttttcctttatttttattggatgataac 33085265  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 50645591 - 50645530
Alignment:
Q  20 acatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataac 81  Q
    |||||||||||||||||| |||||| |||||  ||||| ||| ||||||||||||| |||||    
T  50645591 acatccaattttcaacaacttttagagacaactttttttctctattcttattggataataac 50645530  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 41317370 - 41317312
Alignment:
Q  14 attttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattg 72  Q
    |||||||||||||||||||||||| |||| |||||||||||||| ||| ||||||||||    
T  41317370 attttgacatccaattttcaacaactttttgggacaatcttttttctctattcttattg 41317312  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 41317219 - 41317255
Alignment:
Q  14 attttgacatccaattttcaacaatttttagggacaa 50  Q
    ||||||||||| |||||||||||||||||||||||||    
T  41317219 attttgacatcaaattttcaacaatttttagggacaa 41317255  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 40649636 - 40649577
Alignment:
Q  15 ttttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattgga 74  Q
    |||||||| ||||||||||||||||||||| ||||| |||||||||| ||| ||||||||    
T  40649636 ttttgacaaccaattttcaacaatttttagtgacaacctttttcctctatttttattgga 40649577  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 12946714 - 12946678
Alignment:
Q  14 attttgacatccaattttcaacaatttttagggacaa 50  Q
    ||||||||||||||||||||| |||||||||||||||    
T  12946714 attttgacatccaattttcaataatttttagggacaa 12946678  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 7612107 - 7612150
Alignment:
Q  14 attttgacatccaattttcaacaatttttagggacaatcttttt 57  Q
    ||||||||| |||||||| ||||| |||||||||||||||||||    
T  7612107 attttgacaaccaattttaaacaacttttagggacaatcttttt 7612150  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 12946526 - 12946584
Alignment:
Q  14 attttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattg 72  Q
    |||||||||||||||||||||||| |||| |||||||  ||||| ||| ||| ||||||    
T  12946526 attttgacatccaattttcaacaactttttgggacaactttttttctctatttttattg 12946584  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 2819426 - 2819366
Alignment:
Q  14 attttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattgga 74  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||||||  || ||||||||    
T  2819426 attttgacaaccaattttcaacaatttttagtgacaacctttttcctctctttttattgga 2819366  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 11778751 - 11778691
Alignment:
Q  14 attttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattgga 74  Q
    ||||||||| |||||||| ||||| ||||||||||||| ||||| ||   |||||||||||    
T  11778751 attttgacaaccaattttaaacaacttttagggacaattttttttcttccttcttattgga 11778691  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 28982539 - 28982599
Alignment:
Q  14 attttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattgga 74  Q
    ||||||||| |||||||||||||| |||||| ||||| ||||||||||  || ||||||||    
T  28982539 attttgacaaccaattttcaacaacttttagtgacaacctttttcctctctttttattgga 28982599  T

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