View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20233_low_3 (Length: 398)
Name: NF20233_low_3
Description: NF20233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20233_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 387
Target Start/End: Complemental strand, 22586724 - 22586358
Alignment:
| Q |
19 |
cttatcactatcaaagaccttttttagaaaactataaaattacacttgctccacttgcatgttctcaaccaaaagagggggaataacaaagaaatttacc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22586724 |
cttatcactatcaaagaccttttttagaaaactataaaattacacttgttccacttgcatgttctcaaccaaaagagggggaataacaaagaaatttacc |
22586625 |
T |
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| Q |
119 |
acatatataattcaatgtttagatttcacttaacaaaattgtaagaataatataaaggccccatttcaaattatgaggccgtgaaagatgacacattttg |
218 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22586624 |
acatatataattcaatttttagatttcacttaacaaaattgtaagaataggtaaaaggccccatttcaaattatgaggccgtgaaagatgacacattttg |
22586525 |
T |
|
| Q |
219 |
acaatattacaacattattatttagaatagaaatttccttagaagtcaaaccataatacatacaaaaaaccacatagccacattgcttggctttctttta |
318 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22586524 |
acaatattacaac---attatttagaatagaaatttccttagaagtcaaaccataatacatacaaaaaaccacatagccacattgcttggctttctttta |
22586428 |
T |
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| Q |
319 |
aaagtcaagatagaagaaac-aagtattgcataacaaccacctcttcatatatctactccactctttcat |
387 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22586427 |
aaagtcaagatagaagaaacaaagtattgcataacaaccacctcttcatatatctactccactctttcat |
22586358 |
T |
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